PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0054s0029.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ARF
Protein Properties Length: 726aa    MW: 81229.7 Da    PI: 7.6938
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0054s0029.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3711.5e-22116217199
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f k+lt+sd++ +g +++pk+faee       +++++  ++lt +d +g+ W++++i+r++++r++lt GW  F + +++ +gD+++F  
  Kaladp0054s0029.1.p 116 FSKILTSSDTSPQGGFTVPKRFAEEAlpsldmSQQPPI-QDLTATDIHGKAWTFRHIFRGNPKRHLLTCGWHPFLNNKQVAAGDTCIFV- 203
                          889***************************97545555.49************************************************. PP

                          -SSSEE..EEEEE-S CS
                   B3  85 dgrsefelvvkvfrk 99 
                           + s++el+++++r+
  Kaladp0054s0029.1.p 204 -RGSNGELRIGIRRA 217
                          .449999*****985 PP
2Auxin_resp84.32.6e-28242323283
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                           +a+  +++F v+Y+P++ +s+F+v+++k++k++k+++s+G Rf  ++e+e+s+++r +G v+++ dld +rWp+S+W+ Lk
  Kaladp0054s0029.1.p 242 FNALLYGTIFVVYYHPWTRSSDFIVPYAKYVKSVKIQCSIGARFTTSLEGEESERKRSTGRVIAIDDLDCLRWPGSEWKRLK 323
                          56777889***********************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-35107226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.05E-29109238IPR015300DNA-binding pseudobarrel domain
CDDcd100172.90E-19114216No hitNo description
PfamPF023629.0E-20116217IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084116218IPR003340B3 DNA binding domain
SMARTSM010194.0E-14116218IPR003340B3 DNA binding domain
PfamPF065071.2E-24242323IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MDGRRHELDE ALWHGSAGHD IYIPQVGDLV AYFPQGHLEQ VKACTNHDDD LDTSSLFKLP  60
SKILCSVIDV QLKAESKTDE VFARITLHPE AKQEMSEWEE MNDECRSASI RNVKIFSKIL  120
TSSDTSPQGG FTVPKRFAEE ALPSLDMSQQ PPIQDLTATD IHGKAWTFRH IFRGNPKRHL  180
LTCGWHPFLN NKQVAAGDTC IFVRGSNGEL RIGIRRALRK ENSTTSVISG HDMQLGALAS  240
AFNALLYGTI FVVYYHPWTR SSDFIVPYAK YVKSVKIQCS IGARFTTSLE GEESERKRST  300
GRVIAIDDLD CLRWPGSEWK RLKICSYFVF LICCAVMDGY PNFGIDTTLV LATVYVDQVE  360
WEAGMSEKLV RPGRISLWSI ESLEPDRRGC MLLPPSKKLS RPGLLPTHVN DGNGITLQGS  420
SSSCQGRGNK GTGAPVPSCS WPSSDPFPAY QCAMQIDKFN PQEYYSGAST YPLGLQGASS  480
PLLSLWPSAS GDGGESSNMA DVNGRFLSHD PDEANGLVAK QKELDKHMVF GFNLASTLPE  540
FPSPRPTTAS HELHRRRRRS TPMTSPSTCD AKHVSEPRLT EANNHCMKLG CCLTLHDTHA  600
KVKKCLQVRK HGCKVSISID LTRFNSYKEV IFELDQMFKF EGKLIDGSRE WQVTYIDHEV  660
EYRNSLLMIR ISSSHGILRC IVGNWWYVLF YINRKFKLIV KRLLILPKEC MEEQLPAECC  720
ATAAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A3e-931232423333Auxin response factor 1
4ldw_A3e-931232423333Auxin response factor 1
4ldw_B3e-931232423333Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-102auxin response factor 2