PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0590.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 351aa    MW: 39178.4 Da    PI: 7.0005
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0590.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.71.3e-181562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+lvd +++ G g+W++ ++  g++R++k+c++rw +yl
  Kaladp0053s0590.1.p 15 KGPWTPEEDEKLVDFINKNGHGSWRSLPKLAGLNRCGKSCRLRWTNYL 62
                         79********************************************97 PP
2Myb_DNA-binding52.79.9e-1768113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E+ ++++++  lG++ W++Ia +++ gRt++++k++w+++l
  Kaladp0053s0590.1.p  68 RGKFSEDEERIIIHLHSVLGNK-WSRIATHLP-GRTDNEIKNFWNTHL 113
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.0461062IPR017930Myb domain
SuperFamilySSF466894.87E-3112109IPR009057Homeodomain-like
SMARTSM007176.3E-151464IPR001005SANT/Myb domain
PfamPF002496.9E-171562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-231669IPR009057Homeodomain-like
CDDcd001671.48E-111762No hitNo description
PROSITE profilePS5129428.25263117IPR017930Myb domain
SMARTSM007171.7E-1667115IPR001005SANT/Myb domain
PfamPF002491.6E-1568113IPR001005SANT/Myb domain
CDDcd001673.69E-1270113No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2670117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRSPLSFED DGLKKGPWTP EEDEKLVDFI NKNGHGSWRS LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEDEERIII HLHSVLGNKW SRIATHLPGR TDNEIKNFWN THLRRKLLQM  120
GIDPTTHKPR TDYNNLLMNL TQLLATSNIA NLMSNNNNPW ENLSALRLQA DAAAQLAKAQ  180
LFQNLIQAMN ITNTQNTLGF GTSQDHTSLQ GLLHSNSGSH DTNNNNALSS KHQFVNSSET  240
PLTHQVCDEL QGVANSRAVS YQGGGLNPES GLSTNDNSPY YQVDLPALVT VSKDCSTSAN  300
QIETAKDHNL SSSYTFSSFS PTSSSFQSWA ELFDEEAIHN YSFIKDFLQQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-31131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021287206.11e-108transcription factor MYB39-like
SwissprotQ9S9Z22e-82MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A061G6W51e-107A0A061G6W5_THECC; Myb domain protein 39, putative
STRINGEOY251381e-107(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-79myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]