PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0053s0581.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 201aa MW: 22362 Da PI: 6.7928 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68 | 1.2e-21 | 142 | 197 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++e+e++F+++++p+ ++r +L+++lgL+ rq+k+WFqNrR+++k Kaladp0053s0581.2.p 142 KKRYHRHTAHQIQEMEAVFKECPHPDDKQRMRLSQELGLKPRQIKFWFQNRRTQMK 197 688999***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.24E-20 | 128 | 197 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-22 | 130 | 193 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.633 | 139 | 199 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.5E-15 | 140 | 200 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.6E-19 | 142 | 197 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.10E-19 | 142 | 197 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 174 | 197 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MYGDCQVVLS SMGMNNSNAG SSSSSSNLNL TSMNMNMGMG MGMFSSDSAA ANYFSSPPSN 60 NIQSGSSFNF MSPSTLLMPP LPFHSSYPPL NILTPEESDQ LKGKLDEMES GSGSDQIEAL 120 SANDALDTNN NTDQNQQPQP KKKRYHRHTA HQIQEMEAVF KECPHPDDKQ RMRLSQELGL 180 KPRQIKFWFQ NRRTQMKVFH * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002277673.1 | 5e-47 | PREDICTED: homeobox-leucine zipper protein ROC3 | ||||
Refseq | XP_010663098.1 | 5e-47 | PREDICTED: homeobox-leucine zipper protein ROC3 | ||||
Refseq | XP_010663102.1 | 5e-47 | PREDICTED: homeobox-leucine zipper protein ROC3 | ||||
Swissprot | Q336P2 | 7e-35 | ROC3_ORYSJ; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A0A438GPS7 | 1e-45 | A0A438GPS7_VITVI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | A5AJ70 | 1e-45 | A5AJ70_VITVI; Uncharacterized protein | ||||
STRING | VIT_02s0012g02030.t01 | 2e-46 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 2e-29 | homeobox-7 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0053s0581.2.p |
Publications ? help Back to Top | |||
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