PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0053s0577.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 427aa MW: 47444.8 Da PI: 8.4

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0053s0577.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.1e-32	244	297	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Kaladp0053s0577.1.p 244 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 297 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-15	241	297	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-28	242	297	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-23	244	297	IPR006447	Myb domain, plants
Pfam	PF00249	7.7E-7	245	296	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MELFPAQPDL SLQISPPSTT KPNHTALWPH TSRSSDQEQV ADEEEDQEQS AMDLGFWNRA 60 LSNNDPSTTL SKQQTGPNPA PFNISLSNPS IRVSSSSSLK SSNITFPHHH LLHTSSLPNP 120 NNLRHQATIV ATQNQQQQHG YMSMEPIKGI PIYHQNPARH HHPFFTASTF PHQHPSLLLD 180 SFPASLPSSI RNTNSRSNII NGGSQTCSPA ASCCQSSHHQ THHHGFLRTR FLSRFPGKKN 240 MRAPRMRWTS TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT 300 TDKVAASSDA YENGSSGDNA EDFTLDIHSS ARKQSDRQDQ PSIASAAGGP NALQDKNFQA 360 LWSNFLSREA WLHAGKQKDS LQGAMVSLQD MDDWRCSSIY ERSPEEIIIG RSMKKPNLEF 420 TLGRAL*

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MELFPAQPDL SLQISPPSTT KPNHTALWPH TSRSSDQEQV ADEEEDQEQS AMDLGFWNRA  60
LSNNDPSTTL SKQQTGPNPA PFNISLSNPS IRVSSSSSLK SSNITFPHHH LLHTSSLPNP  120
NNLRHQATIV ATQNQQQQHG YMSMEPIKGI PIYHQNPARH HHPFFTASTF PHQHPSLLLD  180
SFPASLPSSI RNTNSRSNII NGGSQTCSPA ASCCQSSHHQ THHHGFLRTR FLSRFPGKKN  240
MRAPRMRWTS TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS HLQMYRTVKT  300
TDKVAASSDA YENGSSGDNA EDFTLDIHSS ARKQSDRQDQ PSIASAAGGP NALQDKNFQA  360
LWSNFLSREA WLHAGKQKDS LQGAMVSLQD MDDWRCSSIY ERSPEEIIIG RSMKKPNLEF  420
TLGRAL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	245	299	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	245	299	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	245	299	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	245	299	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	245	299	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	245	299	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	245	299	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	245	299	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	245	299	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	245	299	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	245	299	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	245	299	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493491	6e-45	AB493491.1 Arabidopsis thaliana At1g32240 mRNA for hypothetical protein, partial cds, clone: RAAt1g32240.
GenBank	AY048689	6e-45	AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBank	BT029211	6e-45	BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q9C616	3e-61	KAN2_ARATH; Probable transcription factor KAN2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-60	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0053s0577.1.p

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]