PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0053s0462.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 285aa MW: 32855 Da PI: 6.5231

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0053s0462.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.2	1.5e-53	35	162	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtd+elv++yLk+k++g ++el ++i+evd+yk+ePw+L k + +++ ewyfF +rd+ky++g r+nrat++gyWk+tgk Kaladp0053s0462.1.p 35 LPPGFRFHPTDQELVDYYLKRKIHGLEIEL-DIIPEVDLYKCEPWELAdKsFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGK 123 79**************************.99**********85335566888**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 d++v+s +++ +g+kktLv+y+grap+g +t Wvmheyrl Kaladp0053s0462.1.p 124 DRRVIS-QSRPIGMKKTLVYYRGRAPQGIRTGWVMHEYRL 162 **.999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-63	30	185	IPR003441	NAC domain
PROSITE profile	PS51005	59.243	35	185	IPR003441	NAC domain
Pfam	PF02365	2.2E-29	36	162	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MMIKPSHRYI YTTDHTASRR GRKKKKKNIM SPVGLPPGFR FHPTDQELVD YYLKRKIHGL 60 EIELDIIPEV DLYKCEPWEL ADKSFLPSRD PEWYFFGPRD RKYPNGFRTN RATRAGYWKS 120 TGKDRRVISQ SRPIGMKKTL VYYRGRAPQG IRTGWVMHEY RLDENECEDS SGIQDTFALC 180 RVFKKSGEFD RQEQQGQCSL PTAAVMEGSN ILTAMINSEQ EMVMSPDMDM GMGVGSSSSY 240 SRVDEVEELE KDDSWMQFIT DDDPWFSSSS ATMGGEEITT FNHN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-53	24	191	4	174	Stress-induced transcription factor NAC1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	18	26	RRGRKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00363	DAP	Transfer from AT3G17730	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003534099.2	1e-128	NAC domain-containing protein 86
Refseq	XP_028180400.1	1e-128	NAC domain-containing protein 86-like
Swissprot	A4VCM0	5e-88	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A445J227	1e-127	A0A445J227_GLYSO; NAC domain-containing protein 86
TrEMBL	K7LEC2	1e-127	K7LEC2_SOYBN; Uncharacterized protein
STRING	GLYMA09G29760.2	1e-127	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17730.1	1e-115	NAC domain containing protein 57

Link Out ? help Back to Top
Phytozome	Kaladp0053s0462.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]