PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0429.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 332aa    MW: 36902.9 Da    PI: 7.8105
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0429.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-075397244
                         SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          +W+ eE + + +a + + ++   +W ++a++++ g+t  +++  +
  Kaladp0053s0429.1.p 53 SKWSHEENKMFENALAVYDKDspdRWQKVAAMIP-GKTVGDVVKQY 97
                         58********************************.***99998776 PP
2Myb_DNA-binding44.53.6e-14169213347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
  Kaladp0053s0429.1.p 169 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 213
                          8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.08150105IPR017884SANT domain
SMARTSM007171.2E-751103IPR001005SANT/Myb domain
SuperFamilySSF466891.1E-1053107IPR009057Homeodomain-like
PfamPF002494.4E-65397IPR001005SANT/Myb domain
CDDcd001679.52E-754100No hitNo description
PROSITE profilePS5129420.486162218IPR017930Myb domain
SuperFamilySSF466899.72E-17163217IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-17165217IPR006447Myb domain, plants
SMARTSM007175.3E-13166216IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-12166213IPR009057Homeodomain-like
CDDcd001672.29E-11169214No hitNo description
PfamPF002491.3E-12169213IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MKFEMEAEME IRSSGSNPNL NSYGYPEDHH QQQQNQTQRR QHRKQYHQVE SSSKWSHEEN  60
KMFENALAVY DKDSPDRWQK VAAMIPGKTV GDVVKQYEEL EADVSSIEAG LVPVPGYTCP  120
AFTLDWAGGS GGGWSQSGEG FSHGYGGVNG GKRLASVRGL EQERKKGVPW TEEEHKLFLL  180
GLKKYGKGDW RNISRNFVIT RTPTQVASHA QKYFIRQLSG GKDKRRASIH DITTVNLNES  240
QTLSPDQLAR GQHSPDMPFQ WGNQASTGSG GSMDFNGAYG FNSGRSGMLD SYMGSQSLGA  300
FQMQSAMHYP QVCFEHLFYL GKQVLSNSTL G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1651117773RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021278855.11e-114transcription factor DIVARICATA
SwissprotQ8S9H71e-108DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A061GWE31e-111A0A061GWE3_THECC; DIV1A protein
TrEMBLA0A2P5CP361e-111A0A2P5CP36_TREOI; GAMYB transcription factor
STRINGEOY338011e-112(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-82MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]