PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0053s0294.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 27877.5 Da PI: 9.8014 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44 | 3.9e-14 | 61 | 113 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+r+hn+ Er+RR++iN+ ++ Lr+llP + ++s+++s +++ + ++I +Lq Kaladp0053s0294.1.p 61 RKRNHNASERQRRKKINDLYSSLRSLLPAS--EQSGRMSIPTTVARILKFIPELQ 113 7999*************************5..5*****************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 9.29E-15 | 59 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 14.221 | 60 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-13 | 61 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.83E-10 | 61 | 117 | No hit | No description |
Pfam | PF00010 | 1.3E-11 | 61 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.3E-9 | 66 | 118 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MLSVTSSSST SLFGWPSDEA VYGHRINQGF YDLEELAAAA HADHLGTPGG DQGGGEYGDL 60 RKRNHNASER QRRKKINDLY SSLRSLLPAS EQSGRMSIPT TVARILKFIP ELQGEVERLE 120 KKKQAMSKKI NKVRESVFSS SSSKLAGADQ KVRGTDEAKA SITRDKSNRS SVLTSKVGDR 180 EFVIQISTLQ VSVSEILLSL EEDGFQLINA SSSESFSGRV FLNLHLQKVG VIRKMECEGL 240 DEKLLSMLEK RR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 74 | RKRNHNASERQRRKK |
2 | 61 | 72 | KRNHNASERQRR |
3 | 62 | 72 | RNHNASERQRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 1e-39 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0053s0294.1.p |