PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0053s0276.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 1761aa MW: 196446 Da PI: 5.0713 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.7 | 3.5e-17 | 21 | 77 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ qle Le+ ++ + yps++ r++L+ klgL++rq ++WF+ rR k+kk Kaladp0053s0276.1.p 21 KSKRKMKTAFQLELLEKTYAVETYPSEAVRADLSVKLGLSDRQLQMWFCHRRLKDKK 77 679****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.2E-16 | 7 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.72E-15 | 13 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.904 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.5E-14 | 20 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.12E-13 | 21 | 78 | No hit | No description |
Pfam | PF00046 | 1.1E-14 | 21 | 77 | IPR001356 | Homeobox domain |
SMART | SM00571 | 2.0E-18 | 556 | 615 | IPR018501 | DDT domain |
PROSITE profile | PS50827 | 16.592 | 556 | 615 | IPR018501 | DDT domain |
Pfam | PF02791 | 3.4E-16 | 557 | 612 | IPR018501 | DDT domain |
Pfam | PF05066 | 7.1E-13 | 737 | 804 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 4.0E-7 | 952 | 990 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 6.8E-13 | 1128 | 1200 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1761 aa Download sequence Send to blast |
MEEVIEEKKE QMSTPQDGDS KSKRKMKTAF QLELLEKTYA VETYPSEAVR ADLSVKLGLS 60 DRQLQMWFCH RRLKDKKTPA LTTKRQKKDS PGDGAAGTSY SGVGDELAAS SEAGGEHFPV 120 IGLGSGATTF GHGRAVPRNC GVALARIGSD LPPVKRYYET PEAVREMRAI AFVEAQLGEP 180 LREDGPILGM DFDPLPPDAF GAPLGTGEQQ KHSGRSYDMK IFDRTDFKLP KAASGTLHEY 240 QFLPEQPTMR AETYERGNPS HYYVSPPDAP SLRTSSLSAG RIMHGAEFPI GYGFQNQIPS 300 VHFLHQQVRT GHLASSAAGE YETVPRKSSL PNLVDPLFGT PPVNMLETPL LSSDRRLAVE 360 EGASRLERKR KSDEARIAKE LEANEKRIRK ELEKQDLLRR KKEEQMKKDM ERQDRERRKE 420 EERILREKQR EEERFQKEQR RELERREKFL QKESMRAEKL RQKEELRRER EAARLKAAND 480 RAIARRIAKE SMELIEDERL ELMELAASMK GLPSLLSLDY ETLQSLETYR DMLPVFPPKT 540 IKLKKPFAFP PWADSDENVG NLLMAWKFLQ TFADILGLWP FSLDEFLQAF HDYDPRLLGE 600 IHIAILKCII KDIEDVARTP STGLGSNQYS ATIPGGGHPQ IVEGAYAWGF DIKSWQRHLN 660 PLTWPEILRQ LALSAGFGPK LKKTNIESSH RDDQEGNNCE AIISKLRNGT AAENAVALMN 720 EKGYSNSRRS RHRLTPGTVK FAAFHILSLE GSKGITILEV ADKIQKSGLR DLTTSRTPEA 780 SIAAALSRDT TLFERTAPST YCVRPTYRKD PADAEAILSA AREKIRLFKS GLPDAEEVDD 840 VERDEDSDSD VAEDPEAEDL CNDPITKTDV QKDSKGVGLP STSTLSNGNE APIASGGTPE 900 AFNDLSSTHS EVLNEGKHDF ACFNETVNGL GRGDEASPPY LDDMDLDEGY SGEPWVQGLV 960 TGEYSNLSVE ERLHAVVALV GLAIEGNSIR LVLEERLEAA NTLKKQMWAE AQVDKRRVRD 1020 DCVLKVHCPS SGGRSEVGTP NIATEAKRSP VASLNDHGNE ILISQPDRCG DSHVNNSHYG 1080 NISSNPIQDS TFGPDNIQIQ LSGYTYERSR SQLKSVIGQK AEDTYVYRSL PLGQDRRRNR 1140 YWQFITSVST NEPGCSRIFV ELRDGRWRLI DDKQDFDTLV ASLDARGTRE AHLYSMLQKV 1200 QTSFKGNINW KLHPDVGNLL KLECRESNSH PDADGPSSGV CLSNSDLETS SSFAIELGKN 1260 EDERSNALTR YQDFQKWVWS ECFSSSNFCA LRHGGKRATQ LLGICEKCYD SYFFEDKHCP 1320 FCHGTFRYSD CSLGFADHVA QCEHNLQMEP YEIVYPSVSL PLRARLLKVM LALVEVSVPS 1380 EALHSVWTET QRLEWGAKLN NSVSSEDLLQ VLTVLESIIP RDYLSPNFET TNEILGACKA 1440 SDLDKGYGSI RLLPWIPKTT AAVALRLMEL DTAIYYTQQL KLESEKEEAG NYMLPSKYDD 1500 SRKLQDVFTP TPYEIPNVLE NRVDHGASQG GSSKRKRGNG NSGRTGSDRS QRKVSSSKSD 1560 TVHKTVPASN GPLGQMLGWK GAAVGGGRRQ GRRTARTRHR PGKSVMEINN ERSSLNFVPV 1620 KPLENAAGGS DRNEWNAEMQ ATENDVNDVG SSSSSEYDED TGQAMVGEEY DNMAAVDDYP 1680 DVYNRQSQEF NEVSEDEYGD HGVEAEGEED EQGDLDVGRY INEYSDEDEG EGNGDANAGV 1740 NYMLDDPAAT GSSSSADYSD * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002275272.1 | 0.0 | PREDICTED: homeobox-DDT domain protein RLT2 isoform X2 | ||||
Swissprot | Q9FFH1 | 0.0 | RLT2_ARATH; Homeobox-DDT domain protein RLT2 | ||||
TrEMBL | A0A2I4F9F2 | 0.0 | A0A2I4F9F2_JUGRE; homeobox-DDT domain protein RLT2-like isoform X1 | ||||
STRING | XP_002517852.1 | 0.0 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0053s0276.1.p |