PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0053s0252.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NF-YA
Protein Properties Length: 342aa    MW: 37293.8 Da    PI: 8.1679
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0053s0252.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.53.8e-32172228158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  Kaladp0053s0252.2.p 172 QEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHAIRRARGTGGRF 228
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005215.3E-35170231IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.866171231IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-27173228IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.8E-24174196IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860176196IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.8E-24205228IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MGHGNMPTKP EKPSIDLHGN PSPAVYSEPW WCSAGYNQAP SVVATGNAGY QPSRNLESNT  60
VQSFSTGGPN EDEDGNDVSK KSQQDAGCQQ ERSPHRDGNN IMPGAPTSGA DNCITQHPQL  120
ELVGHTMACA PNPYQDPYYG GMMAAYGPQP LIYPHPLGPH HARMPLPLEV AQEPVYVNAK  180
QYHGILRRRQ SRAKAELEKK LIKVRKPYLH ESRHQHAIRR ARGTGGRFAK KTDAENGGPA  240
AAQSVSSSGS ELMPSDSAET WNSHRCRFED PKGSSQSQMH NEHHKQTNSD QNGGGYGNSS  300
AFRPTSYHSG SRNEENDCSS QQWGSIASNN QVTSQRRFAI Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-18172228258NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446125.11e-100nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446126.11e-100nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446127.11e-100nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006446128.11e-100nuclear transcription factor Y subunit A-1 isoform X1
RefseqXP_006470619.11e-100nuclear transcription factor Y subunit A-1
RefseqXP_006470620.11e-100nuclear transcription factor Y subunit A-1
RefseqXP_006470621.11e-100nuclear transcription factor Y subunit A-1
RefseqXP_006470622.11e-100nuclear transcription factor Y subunit A-1
SwissprotQ9LXV53e-62NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A067F5724e-99A0A067F572_CITSI; Uncharacterized protein
TrEMBLV4U5J84e-99V4U5J8_9ROSI; Uncharacterized protein
STRINGXP_006470619.11e-100(Citrus sinensis)
STRINGXP_006446125.11e-100(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.47e-65nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]