PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0052s0013.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | Nin-like | ||||||||
Protein Properties | Length: 240aa MW: 27960.4 Da PI: 10.2605 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 82.8 | 3.3e-26 | 124 | 173 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++++le+++kyF++pi+ AAk+++v+lTvLK++CR ++I+RWPhRkiksl Kaladp0052s0013.1.p 124 STLELEEIQKYFDMPITLAAKKMNVGLTVLKKRCRDLNIMRWPHRKIKSL 173 689*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.427 | 107 | 194 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.6E-22 | 125 | 173 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MKREPLSPKL NSYPSNVAAP IADRYNADHH CMVFDPSTQY QTWKNGPKLE YDPHTSHDAH 60 FYLSEDEMTY LNQLFKTDPV EPLECTGRKL GNVSADGTMR RDMKEARKPQ AGTRKRVSRF 120 TKSSTLELEE IQKYFDMPIT LAAKKMNVGL TVLKKRCRDL NIMRWPHRKI KSLKSLISNV 180 KELGLEKEIQ MLEEHRMTVE KMPHVELTEK TKKLRQACFK ANYKKRRQVQ ASRCFSLIK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021297552.1 | 1e-55 | protein RKD4 | ||||
TrEMBL | A0A2G9G3C3 | 2e-53 | A0A2G9G3C3_9LAMI; Uncharacterized protein | ||||
STRING | EOY23580 | 1e-53 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 1e-44 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0052s0013.1.p |