PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0051s0099.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 672aa    MW: 74985 Da    PI: 5.8647
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0051s0099.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.54.2e-10622668346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                          rW+  E++ l  +v+++G+g+Wk I  t     + Rt+ ++k++w+ 
  Kaladp0051s0099.1.p 622 RWSLLEEDTLRAGVQRFGKGNWKMILVTYRdifEERTDVDLKDKWRR 668
                          9********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.997615671IPR017930Myb domain
CDDcd116601.12E-16621671No hitNo description
Gene3DG3DSA:1.10.10.601.3E-9622670IPR009057Homeodomain-like
PfamPF002498.2E-6622668IPR001005SANT/Myb domain
SuperFamilySSF466892.77E-12622670IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MGSGGIVDKW LVELAIRTAK DDKVVAKTLS LAPRLRDDVG LKKIVLLRGI ESEMDEGSVS  60
ERMLDALEVA FELDRRQGLD VLESMKVAYC SVAVDCVARF VKSVGGGDVY LKAVERVWRR  120
RIGPLIALNV DLVSEQLESW RDTVESAIWD DNVRDKLFVT NTRYEALVAI KGYLDEAWKI  180
VGPSFLELLA SSELGKSLVK AQQQLCLPSI SEPSEGEPQR PFDMPGIFNH NAQVLSDPSN  240
LVSCNDQEDV AKILTQNLGD NSKSPADIYH KEVSEASFCA HTVNRHLDEN MRLADCGIAE  300
EQNLLQSSSG LARDQSDNVE LVHVKSKVAE DATLPLPGVC ATNSFVCDDH LKGAGTDFVN  360
ELKADLRSSS AQGNLQSLNN SKAHYKDTRK LRVRSKHVGR PNKRPKPVRV NNSEDWDLEG  420
LDTQYHPLPE NEVIKVREEL KSSSRELQAA VKDPLPDALR VAEAVISDVS RNCIPQGAPA  480
ASITDRETPN FQDVEVDRGR DKASTSHSAE VITSNTEGKT MNLRTNKSYE RDPRDAAGNA  540
SPPETVGDGD NNVQNEGSRH GNRRQRANLW ERDASARTYE WDDSIDGSQE ENYGLPTPKT  600
HVNPPRKNNG SVKYARRRHI KRWSLLEEDT LRAGVQRFGK GNWKMILVTY RDIFEERTDV  660
DLKDKWRRMT K*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.12e-23TRF-like 5