PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0050s0289.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family RAV
Protein Properties Length: 352aa    MW: 38790.6 Da    PI: 10.0455
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0050s0289.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.5e-1273121155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s++kGV   + +grW A+I++      ++r++lg+f  ++eAa+ ++ a+++++g
  Kaladp0050s0289.1.p  73 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARVYDIAAQRFRG 121
                          689***9788.8*********3.....5**********99*************98 PP
2B31001.4e-31195297196
                          EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                          f+k+ tpsdv+k++rlv+pk++ae+h      +  +++++ l +ed  gr+W+++++y+++s++yvlt+GW++Fvk+++L++gD+v F+ 
  Kaladp0050s0289.1.p 195 FEKAITPSDVGKLNRLVIPKQHAEKHfplqsgSPASTKGVLLNFEDAGGRVWRFRYSYWNSSQSYVLTRGWSRFVKEKNLRAGDVVSFYK 284
                          89***************************98633445899*************************************************6 PP

                          -SS.SEE..EEEE CS
                   B3  85 dgr.sefelvvkv 96 
                          +   ++++l++ +
  Kaladp0050s0289.1.p 285 STGaTDRQLHIDF 297
                          6444777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.35E-2373128No hitNo description
PfamPF008471.0E-673121IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1673129IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-1874129IPR001471AP2/ERF domain
PROSITE profilePS5103219.45474129IPR001471AP2/ERF domain
SMARTSM003801.6E-2874135IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.103.6E-39189299IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.4E-30192294IPR015300DNA-binding pseudobarrel domain
CDDcd100173.54E-29193295No hitNo description
SMARTSM010192.2E-24195301IPR003340B3 DNA binding domain
PfamPF023624.3E-28195299IPR003340B3 DNA binding domain
PROSITE profilePS5086314.607195299IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009910Biological Processnegative regulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MDLNCSDDMT STATKDASSS SASSSLIIAP APPLTLAALR VNPLCRMGSG ASVVIDTDNG  60
VEAESSGRKL ASSRFKGVVP QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR VYDIAAQRFR  120
GRDAVTNFKP LKTDEACSAE YSFLTSRSKS EIVDMLRKHT YAEELEQSKR HSGSDTNKPD  180
PRSSPGSGPA REHLFEKAIT PSDVGKLNRL VIPKQHAEKH FPLQSGSPAS TKGVLLNFED  240
AGGRVWRFRY SYWNSSQSYV LTRGWSRFVK EKNLRAGDVV SFYKSTGATD RQLHIDFKSR  300
VGVIASASKP SPITPLDNIV RLFGVNIGKS SNERPREMEL LGFESCKRRR G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-5719231111128DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00139DAPTransfer from AT1G13260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022776993.11e-148AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-134RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A061EB301e-146A0A061EB30_THECC; AP2 domain class transcription factor
STRINGEOY021361e-147(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-133related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]