PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0050s0212.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

GRF

Protein Properties

Length: 213aa MW: 23914.4 Da PI: 9.4325

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0050s0212.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.8	1.1e-24	133	177	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrC+RtDGKkWRC +++++ +k+CE+Hlhrgr+rsrk +++ Kaladp0050s0212.1.p 133 DPEPGRCKRTDGKKWRCAKEAMPEYKYCEKHLHRGRHRSRKLVDP 177 79***************************************9987 PP
2	QLQ	37.1	9.5e-14	67	101	3	37
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT +Q q+L++Q+ +++y+ a+++vP Ll +i+k Kaladp0050s0212.1.p 67 FTFMQRQELEQQACIFRYIEAGAQVPYPLLYPIWK 101 9********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51666	17.026	66	101	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	4.0E-9	67	100	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	24.773	133	177	IPR014977	WRC domain
Pfam	PF08879	2.2E-20	134	175	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MVDSATQVSR LPDGAETGID LGLELGLGSN FEAEMRKYKE RVVVVLDDEE DDDDRRRKKR 60 VRVPMGFTFM QRQELEQQAC IFRYIEAGAQ VPYPLLYPIW KSVAGSADRC RLPFIPNLFA 120 GPVGLSWKQG RSDPEPGRCK RTDGKKWRCA KEAMPEYKYC EKHLHRGRHR SRKLVDPSSA 180 TGLPPPPPSQ TKAPHFPAPE RIGLSIALPS GQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	54	59	RRRKKR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Swissprot	Q6AWX7	1e-36	GRF12_ORYSJ; Growth-regulating factor 12
TrEMBL	A0A438JJF5	7e-38	A0A438JJF5_VITVI; Growth-regulating factor 10
STRING	VIT_02s0025g04910.t01	1e-37	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-30	growth-regulating factor 2

Link Out ? help Back to Top
Phytozome	Kaladp0050s0212.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]