PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0050s0152.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HB-other
Protein Properties Length: 354aa    MW: 39584.2 Da    PI: 4.6232
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0050s0152.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.64.2e-082853192155
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          + +yps+++++eL + +gL  +q+++WF N+R ++
  Kaladp0050s0152.1.p 285 NWPYPSEADKAELERATGLHPKQISNWFINQRKRH 319
                          569*****************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012563.2E-15151202IPR005541KNOX2
PfamPF037912.8E-18156201IPR005541KNOX2
PROSITE profilePS5007111.888259322IPR001356Homeobox domain
SMARTSM003895.6E-12261326IPR001356Homeobox domain
SuperFamilySSF466892.1E-16262328IPR009057Homeodomain-like
CDDcd000863.26E-12262322No hitNo description
Gene3DG3DSA:1.10.10.602.0E-23266322IPR009057Homeodomain-like
PfamPF059203.2E-16279318IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MMEEIDMSYP DHVALESVLD QYPSSALMTP EHMMLPYDYQ SFISSELFHH ICLAGGELVS  60
SPPSSQLFDL EADSSGAMAT DCPADANCQA HPIQENEDVE EELVIKSEIL HHPLFPRMRR  120
AYADCQMSAS GGGPLETSFS DETEPWKDNV STLILGSDPE LDEFMETYCE MLEKHNEDLR  180
NTFTGASAFL NEMEMQLADL CGALSKTSLS DQPAAATGNI AADHQASKCN NKAKSDLKMS  240
LLSKYRGGHL NNLKLEFSKR TKKKMGKLPG QARQALLHWW ESHHNWPYPS EADKAELERA  300
TGLHPKQISN WFINQRKRHW KTPPESLQYS CNDNDLLSAG TVVHFADEDF DAP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G70510.15e-67KNOTTED-like from Arabidopsis thaliana 2