PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0048s0971.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 262aa MW: 28889.6 Da PI: 9.5191 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.6 | 2.7e-40 | 64 | 163 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrr+Ca++C++ pyf ++p+kfa vhk+FGasnv+k+l ++pe +r d+++slvyeA++r+rdPvyG++g i++lqqq++++ Kaladp0048s0971.1.p 64 PCAACKLLRRRCAQECPFFPYFSPHEPQKFASVHKVFGASNVSKMLMEVPEAHRADTANSLVYEANVRLRDPVYGCMGAISALQQQVQSM 153 7***************************************************************************************** PP DUF260 91 kaelallkee 100 +ae++++++e Kaladp0048s0971.1.p 154 QAEINAIRAE 163 *****99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.689 | 63 | 164 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-40 | 64 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MSRERDKSSQ FSDELEKRIK RSASVGATET ITSEYNSASD QMIVGRRQML GSPGRRTRLN 60 TITPCAACKL LRRRCAQECP FFPYFSPHEP QKFASVHKVF GASNVSKMLM EVPEAHRADT 120 ANSLVYEANV RLRDPVYGCM GAISALQQQV QSMQAEINAI RAEILNYKLR EEANGIVTTN 180 SYSNYMTSNF IPPSPPWANI TVASLTPRPP SSSVVAATSA SHLLTTTTSS SVSVYTNQSS 240 IRNVKMGYSN SIVNENVRYL D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-43 | 64 | 178 | 11 | 124 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-43 | 64 | 178 | 11 | 124 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018821727.1 | 1e-84 | PREDICTED: LOB domain-containing protein 15-like | ||||
Refseq | XP_023925198.1 | 1e-84 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 8e-69 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | A0A2P5AHJ8 | 5e-84 | A0A2P5AHJ8_TREOI; Wilm's tumor protein | ||||
STRING | cassava4.1_029925m | 9e-82 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 7e-71 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0048s0971.1.p |
Publications ? help Back to Top | |||
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