PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0727.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 229aa    MW: 25934.2 Da    PI: 6.4322
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0727.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-17550348
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +WT+eEd ll+++++q+G g W++++   g++R++k+c++rw++yl
  Kaladp0048s0727.1.p  5 AWTEEEDHLLKKCIEQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYL 50
                         7*******************************************97 PP
2Myb_DNA-binding44.43.9e-1456100147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg +  +E +l+++++  lG++ W++Ia++++ gRt++++k++w+ +
  Kaladp0048s0727.1.p  56 RGTFADDEVLLIIKLHSHLGNR-WSLIASRLP-GRTANDVKNYWNCH 100
                          7888999***************.*********.***********977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.393154IPR017930Myb domain
SMARTSM007174.2E-13252IPR001005SANT/Myb domain
PfamPF002491.3E-15550IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-20557IPR009057Homeodomain-like
SuperFamilySSF466892.09E-26597IPR009057Homeodomain-like
CDDcd001677.00E-11550No hitNo description
PROSITE profilePS5129419.13555105IPR017930Myb domain
SMARTSM007171.8E-1355103IPR001005SANT/Myb domain
PfamPF002491.3E-125698IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.6E-2258105IPR009057Homeodomain-like
CDDcd001671.57E-961101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MGGVAWTEEE DHLLKKCIEQ YGEGKWHRVP LLAGLNRCRK SCRLRWLNYL RPNIRRGTFA  60
DDEVLLIIKL HSHLGNRWSL IASRLPGRTA NDVKNYWNCH LSKKLSKAHN NHETMSPVTT  120
ANKGGHFTAY QYQTLTSISA TSLIGPHEDQ PSLMHLEDTY GLELELVGSN GMYITCGRDE  180
ADGQNEVNKF ASELEFEGTK MTAGREISSM DNHIGDWDEV IFDMDLWG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-2051056105MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-20510560159MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-20510560159MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-2051056105C-Myb DNA-Binding Domain
1msf_C2e-2051056105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010027133.16e-71PREDICTED: transcription factor MYB113
SwissprotQ9FNV99e-53MY113_ARATH; Transcription factor MYB113
TrEMBLA0A061F2619e-70A0A061F261_THECC; Myb domain protein 113, putative
STRINGEOY107522e-70(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-55myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]