PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0702.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 474aa    MW: 53294 Da    PI: 4.7838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0702.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.83.3e-12231274654
                          HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                           e+ErrRR+++N+++ +Lr+l+P  +      Kl+Ka+iL  A+ Y+k+L
  Kaladp0048s0702.2.p 231 LEAERRRRKKLNERLYNLRSLVPIiS------KLDKASILVDAITYVKDL 274
                          589*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142156.7E-910134IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.03E-14222279No hitNo description
PROSITE profilePS5088816.564225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-17227290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-10230274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-14231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.7E-16232290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.596366438IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0003677Molecular FunctionDNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MGCFGWLCRV IEWLDCCCAS AAVNSLDKQD ELMFPVSSVF CCRDAVFQHQ RTQCCDFLSQ  60
LPSSVSLDDS GIYAQVLFSN QPRWLNFFNN PDQENPSEEI HATRVLIPVP GALVELFAAK  120
QVFEDQQVVD FVMSHCSNQL ELQAFFNSGL PSSTHGAHDN GYGMEAMMTH DGSDLPREPS  180
GGHSKDLNEK DSVKPEMGRS DSISDCSDQI DDEDDAGCRK RNGKRPQAKN LEAERRRRKK  240
LNERLYNLRS LVPIISKLDK ASILVDAITY VKDLKKQEKE LQDELEELSN DEDVRNNGTA  300
NIEAPTDFMS YPDNLNAPNN LLFGAIDSMQ PCTLITRTHE AATEDDKVQQ MEPQVEVTLI  360
NANKFFIKVF CEHKPGRLVR LLEFLNSLGL EVTNVNVTSC KKLVSNLFEV ELKRDSEVVA  420
DDLKNSLLEL TRIPLSSGWM HDQIPSKPGN GVDIYQCHHG MMNHHGIPYH LQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-12223295275Transcription factor MYC2
5gnj_B1e-12223295275Transcription factor MYC2
5gnj_E1e-12223295275Transcription factor MYC2
5gnj_F1e-12223295275Transcription factor MYC2
5gnj_G1e-12223295275Transcription factor MYC2
5gnj_I1e-12223295275Transcription factor MYC2
5gnj_M1e-12223295275Transcription factor MYC2
5gnj_N1e-12223295275Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218239RKRNGKRPQAKNLEAERRRRKK
2233240ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015576045.11e-120transcription factor ABORTED MICROSPORES isoform X2
TrEMBLA0A2N9FLJ01e-134A0A2N9FLJ0_FAGSY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-31bHLH family protein