PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0048s0655.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

NAC

Protein Properties

Length: 289aa MW: 33397.5 Da PI: 7.1279

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0048s0655.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	164.1	5e-51	7	131	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lp+GfrFhPtdeelv++yL ++++++++++ +++e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nr++ +gyWkatg dk Kaladp0048s0655.1.p 7 LPAGFRFHPTDEELVTHYLLRRCASQPISV-PIVREIDLYKFDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRTAGTGYWKATGADK 95 799*************************.88***********7666789******************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++vg+kk Lvfy g+ap+g+kt+W+mheyrl Kaladp0048s0655.1.p 96 PIGK--PQTVGIKKALVFYAGKAPHGVKTNWIMHEYRL 131 98..789***************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.88E-61	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	59.441	7	158	IPR003441	NAC domain
Pfam	PF02365	3.0E-27	8	131	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MTAGLNLPAG FRFHPTDEEL VTHYLLRRCA SQPISVPIVR EIDLYKFDPW QLPEMALYGE 60 KEWYFFSPRD RKYPNGSRPN RTAGTGYWKA TGADKPIGKP QTVGIKKALV FYAGKAPHGV 120 KTNWIMHEYR LANVDRSARK RNSNLRLDDW VLCRIYNKKG KIEKTTTSSS QTPFEQEFED 180 EKPRINLPDP KMEIESPQTH PINASDSNPR STCSDHMSSP DVTWNREVQS EPRWSELDMF 240 MNYPFDFTDN PYENNGPFSD PGQAQFEAQY SFPSPWQDML MYTQPKPL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-79	3	164	11	174	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in regulation of seed germination under flooding. {ECO:0000269\|PubMed:19176720}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By low-oxygen stress. {ECO:0000269\|PubMed:19176720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020220700.1	1e-134	NAC domain-containing protein 2
Swissprot	Q8H115	1e-108	NA102_ARATH; NAC domain-containing protein 102
TrEMBL	A0A151T497	1e-132	A0A151T497_CAJCA; NAC domain-containing protein 2
STRING	Gorai.012G037600.1	1e-123	(Gossypium raimondii)
STRING	XP_004503901.1	1e-123	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63790.1	1e-110	NAC domain containing protein 102

Link Out ? help Back to Top
Phytozome	Kaladp0048s0655.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]