PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0527.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 493aa    MW: 55704.3 Da    PI: 9.2458
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0527.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.59.6e-08470492326
                          S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                          + +C +fa+ G C++G++CkF+Hg
  Kaladp0048s0527.1.p 470 RQPCWYFAE-GRCRFGSNCKFSHG 492
                          67999****.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF689061.72E-7107152No hitNo description
Gene3DG3DSA:1.10.720.302.2E-8108152IPR003034SAP domain
SMARTSM005130.0021118152IPR003034SAP domain
PfamPF020372.2E-8118152IPR003034SAP domain
PROSITE profilePS5080010.166118152IPR003034SAP domain
PROSITE profilePS5010316.173468492IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-5469492IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5470492IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-4472492IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MAFAEHLGAD RRPDGVVDGE DGDTERDFTE EEDSDLSVSD DSVDDPTFNE LEETMSGLSK  60
LSVQKKKASS SSSSARGRRL ESELVEAVDM DVGDDELLEE VDRNSFEAVE GLIRGGKLEK  120
LKIEQCKVYL RKYGLRLTGN KETLIKRISE HIRILNGGGE REYPAYSFVL NCKGDACMGD  180
VVMFEQKVYA AYDLAARSGP PIGTRVIAGR IVKESYGAAK QQHTFTIEVL WSRGEKPLPP  240
LHPLLIKGRN LYKMKTLRQR WEDETLREQA LRDKHLRGAA ARTDREMRIR EKKMRRELRA  300
KRVPRTDKYD KDHAPPILPQ NNNKKHPLAA HDNQAMNQPD ATESRNIMGQ QRNQSAPQQK  360
SQVQYSGMDS THHPHNRSVR GRGPAHGGFE NENSRLHPGS FQNVHNQQNG TTEVMRRYHG  420
AARRPLAAHA HQPPLSSREN IECPARSFSP PAGPRFSQQV RGNHHQHPPR QPCWYFAEGR  480
CRFGSNCKFS HG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-