PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0431.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 597aa    MW: 65955.7 Da    PI: 5.72
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0431.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-172067148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W +eEd ll+++vk++G ++W+ + ++ g+ R++k+c++rw+++l
  Kaladp0048s0431.1.p 20 KGPWKPEEDMLLIEYVKKHGERDWNMVRKHSGLARCGKSCRLRWNNHL 67
                         79********************************************97 PP
2Myb_DNA-binding50.74e-1673116146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          +g+++++E++l+ +++ q+G++ W++Ia++++ gRt++++k++w++
  Kaladp0048s0431.1.p  73 KGPFSPDEEKLICELHSQMGNK-WARIAAMLP-GRTDNEIKNFWNT 116
                          79********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.8631571IPR017930Myb domain
SuperFamilySSF466891.21E-2918114IPR009057Homeodomain-like
SMARTSM007173.6E-151969IPR001005SANT/Myb domain
PfamPF002491.8E-152067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-242175IPR009057Homeodomain-like
CDDcd001674.08E-132267No hitNo description
SMARTSM007171.4E-1572120IPR001005SANT/Myb domain
PROSITE profilePS5129419.59472122IPR017930Myb domain
PfamPF002494.8E-1573116IPR001005SANT/Myb domain
CDDcd001674.34E-1175116No hitNo description
Gene3DG3DSA:1.10.10.602.3E-2376120IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MVAKDEKVDA ASPAQAELKK GPWKPEEDML LIEYVKKHGE RDWNMVRKHS GLARCGKSCR  60
LRWNNHLRPN LRKGPFSPDE EKLICELHSQ MGNKWARIAA MLPGRTDNEI KNFWNTRVKR  120
LARKGVPLYP ADVQSPRPDL LNPYLHHLDA QNNASSSSLS TSSSSNLQLH PPALLSPTTP  180
TSHPLLFPPS ASSQTFQDYD VGLQDSMAMY DAALENFRQQ QQQQQMFASA MMNDAPSPQL  240
TSSLQRFKRH RSVPNLTISV PPVRHVALHP FSPLGLSTSS SSPMGRSVSV AGSPTTTTSY  300
MHVASSPHSY ASSPTGMVLS PTALQLGISM PQPAMRLPLS SSPVVNCRPT YLPRTSSFSF  360
DPMLFDLNPA AAQVTHMQNP TQTLDAIDNE LAFSVEDLGI SMDHETTGIP PNQPSYHVNG  420
PQQMQTANCN NAGLLDEFLK EAETISIRGE EKAEFSAEQA EAFLKELESD WEQSRLDCST  480
SGQASMDKPE AQTVREYQME SSMAEPELNN ELSNLLEANP MDHSFWNDGS DGLDLGCNNG  540
TPKSQASQPS DDNDHHHQYY QLNHFIDDHL GMEMHQLTGS VPVGASPTWD NMPGIY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-33171204106B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.13e-57myb domain protein 101