PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0377.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 687aa    MW: 76845.5 Da    PI: 6.2674
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0377.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-10637683346
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 
                          rW+  E++ +  +v+++G+g+Wk I +  +   + Rt+ ++k++w+ 
  Kaladp0048s0377.3.p 637 RWSVLEEDTIRAGVQRYGKGNWKVILNAYPdifEDRTEVDIKDKWRR 683
                          9********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.26630686IPR017930Myb domain
SuperFamilySSF466893.9E-12632685IPR009057Homeodomain-like
SMARTSM007174.1E-4634686IPR001005SANT/Myb domain
CDDcd116601.50E-16636686No hitNo description
Gene3DG3DSA:1.10.10.606.6E-11637685IPR009057Homeodomain-like
PfamPF002495.9E-9637683IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MGTSCILDKW MVEFGVRSRR HDRLVVKMLS LVPQLRDDVG LKKMVLFRAI DSEVDEGSVS  60
EKTLDVLEIA FELDRKQGLD VLESMKAAYC AVAVDCVARF VKSVGEGDKY FKAVKRVWRK  120
RIGRLFSLNV GLVSEQLDTW RNTVESAIWD DNVRDKLFVT NTRYEALIAT KGYLDEAWKT  180
VGPSFLELLV SSTLGKSFVE AQSLCLPRTS EPIEGGSQRP FDTPDPDIRT EKCDGEVLKG  240
PCDPSSPISS PMLKNKDRDD VPNILTQNLG FNSKNPNVEH REEVSEASLC AHTVNLHPDE  300
TVKLAVFGTA EEQNLPPTSR GLTLDQSENV EPVHLKAKGA EEADLPLPGV SANNSFDNDD  360
HLKGADTNVV KEKEADMPSS CPHGNLPSQS NSKVLYKEDT NKLRGRSKHA GRFKKRFKRV  420
RINDTDDVDL EESDNQYDLL PENTVAKIHE ELKSSSIELH AVVKDPLPGA LHVAEVVISD  480
VSRNCIPREI PVASITNMDT LNSCDVEEEK GKDKISTSHA IKASASSMEG SAMNLKSNQG  540
HERDPRDAAI NASTPEAVGD GDKNLQNEGS GHENRQKRVN LWERNCSAHT YKWDDSVDGS  600
PGESPRLRTL RTPRPYVNSP LKKYDSLKFA RRRKIKRWSV LEEDTIRAGV QRYGKGNWKV  660
ILNAYPDIFE DRTEVDIKDK WRRMTN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15720.11e-13TRF-like 5