PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0278.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 311aa    MW: 35083.5 Da    PI: 7.3069
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0278.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-092872345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          WT eE +l+ +a +++ ++   +W+++a++++ g++  +++  +q
  Kaladp0048s0278.1.p 28 VWTHEENKLFENALALYDKDtpdRWAKVAAMIP-GKSVVDVIKQYQ 72
                         5********************************.*******99998 PP
2Myb_DNA-binding43.38.7e-14136180347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +W ++E+ l++ + k++G+g+W+ Iar + ++Rt+ q+ s+ qky
  Kaladp0048s0278.1.p 136 PWNEDEHRLFLMGLKKYGKGDWRNIARNFVTTRTPTQVASHAQKY 180
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.4112479IPR017884SANT domain
SMARTSM007172.4E-82577IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-112882IPR009057Homeodomain-like
PfamPF002493.0E-82872IPR001005SANT/Myb domain
CDDcd001672.23E-72974No hitNo description
Gene3DG3DSA:1.10.10.608.3E-12129189IPR009057Homeodomain-like
PROSITE profilePS5129419.4129185IPR017930Myb domain
SuperFamilySSF466892.14E-15132184IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-17132184IPR006447Myb domain, plants
SMARTSM007171.9E-12133183IPR001005SANT/Myb domain
CDDcd001674.55E-10136181No hitNo description
PfamPF002493.3E-11136180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MNWGVEVLSS SSHGGSSDWL FEISMNCVWT HEENKLFENA LALYDKDTPD RWAKVAAMIP  60
GKSVVDVIKQ YQALEEDIID IEAGLIPIPG YNSSSSFTME WMVNRDFEGM KQICGSEVKR  120
CSTNLGFNQE MKKGVPWNED EHRLFLMGLK KYGKGDWRNI ARNFVTTRTP TQVASHAQKY  180
FIRQLNRGKD KRRSSIHDTT IVNLMDHASP SADTNKDLLQ DQPSSVEKSP QPSDLVCLTQ  240
TFYSPKVANR ESLMVFNSST ENSFTTSTPR TAATYGHSLK EQTMHRSIFL GSQCGAQTMV  300
FHVPSVQHRQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-1729941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002278729.11e-118PREDICTED: transcription factor DIVARICATA
RefseqXP_010654186.11e-118PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H79e-96DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A438JAN21e-118A0A438JAN2_VITVI; Transcription factor DIVARICATA
STRINGVIT_08s0007g01920.t011e-117(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-92MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]