PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0224.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB
Protein Properties Length: 352aa    MW: 39015.6 Da    PI: 6.2264
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0224.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-17653148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lvd ++  G g+W++ ++  g++R++k+c++rw +yl
  Kaladp0048s0224.1.p  6 KGPWTPEEDKKLVDHIETNGHGSWRALPKLAGLNRCGKSCRLRWTNYL 53
                         79********************************************97 PP
2Myb_DNA-binding55.71.1e-1759104148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg++++eE++ +++++  lG++ W+tI+++++ gRt++++k++w+++l
  Kaladp0048s0224.1.p  59 RGKFSEEEEQAIINLHSVLGNK-WSTISSHLP-GRTDNEIKNFWNTHL 104
                          89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.246153IPR017930Myb domain
SuperFamilySSF466897.7E-313100IPR009057Homeodomain-like
SMARTSM007174.1E-14555IPR001005SANT/Myb domain
PfamPF002495.0E-16653IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-23760IPR009057Homeodomain-like
CDDcd001674.18E-11853No hitNo description
PROSITE profilePS5129427.19354108IPR017930Myb domain
SMARTSM007177.1E-1758106IPR001005SANT/Myb domain
PfamPF002497.3E-1659104IPR001005SANT/Myb domain
CDDcd001671.29E-1261104No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2761108IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MHGLKKGPWT PEEDKKLVDH IETNGHGSWR ALPKLAGLNR CGKSCRLRWT NYLRPDIKRG  60
KFSEEEEQAI INLHSVLGNK WSTISSHLPG RTDNEIKNFW NTHLKKKLLQ MGIDPITHRP  120
RTDHLNLLAN LPQLLAAANL THLISNSANP WDNAMRLQQH LSSADHQQHL AKVQLMSNLL  180
QALNSAANPP LNLDLMMSSL FGKQGSFQDQ RVLESLIRMN NSGQMEASDD EIGNGGQIGH  240
FSAGLCNPMQ LDDFTTLGSC EPFLNSNSSQ FGGSYCAPFG DYISEIPALV SATSPERGIS  300
SINENTDNSK YPSAEASNPT SMTSTTFEAW GDHHQMVDDE ASESYWKDII E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-2841085108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022746687.11e-114transcription factor MYB41-like
TrEMBLA0A061EYD81e-110A0A061EYD8_THECC; Myb domain protein 107
STRINGEOY101101e-111(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-87myb domain protein 9