PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0048s0034.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family MYB_related
Protein Properties Length: 491aa    MW: 55776.9 Da    PI: 7.6773
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0048s0034.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.4e-09391438448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          W++ E  +l+++v+++G g+W+ I r +    ++Rt  ++k++w+++l
  Kaladp0048s0034.1.p 391 WSEYEITILIEGVAKYGVGRWTEIKRGLFpptTRRTSVDLKDKWRNLL 438
                          **************************99889***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.63382442IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-12384441IPR009057Homeodomain-like
SuperFamilySSF466891.95E-14385440IPR009057Homeodomain-like
SMARTSM007171.4E-9387440IPR001005SANT/Myb domain
CDDcd116602.64E-18389439No hitNo description
PfamPF002492.5E-7391438IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MVDVPKDMSY RNNERDKRYT YELLEFKEYD TFPPIPEDEL MGLEFLLAEP SCNDGLVEPF  60
LGVCLPNSQK CFVTEDRRDH KKITNGTETS DRIPIHEDQH QEDNDGQVQG TDEGILLEMN  120
NLPSICEDYL FDCKLGGELA MLDCDSSKKL LINQPNELRS DNGKEFDATI GYYCNSATEM  180
LNKSMKKCRN LAIGSGPGWQ SSAILSHIKT KSEVVSQGEE PLISDSVATF SSIVNDGSPH  240
WRDNDAFFTK KRPRKRPMRF IDEYSKYHSV HANKRSGGLS KNSKEKTARA KSRYQDCLKQ  300
DVRERKQVSH NEYMTEAIQV PFGPLMLKEC SRKKASVPLG HEDCSKAIVT FSGVNTITEL  360
SLAPSLDERS DDNDVGDVPR DKSGRKHNRY WSEYEITILI EGVAKYGVGR WTEIKRGLFP  420
PTTRRTSVDL KDKWRNLLKA STAQLRSKNE GRRVTHQQVP QSVLRQVKEL AVMHPYPKNP  480
SPKNALTVRC *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.12e-24TRF-like 6