PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0047s0272.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 311aa    MW: 34827.7 Da    PI: 6.5571
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0047s0272.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-1884137356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ eq+++Le+ Fe+ +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  Kaladp0047s0272.1.p  84 KKRRLNIEQVKTLEKTFEQGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 137
                          4557899**********************************************9 PP
2HD-ZIP_I/II129.51.4e-4183173191
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrl+ eqvk+LE++Fe+ +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k+ene+L +++++L++e
  Kaladp0047s0272.1.p  83 EKKRRLNIEQVKTLEKTFEQGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYNILKRHFDAVKAENESLIAQNQKLHSE 172
                          69**************************************************************************************98 PP

          HD-ZIP_I/II  91 l 91 
                          +
  Kaladp0047s0272.1.p 173 I 173
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.25E-1976141IPR009057Homeodomain-like
PROSITE profilePS5007117.31379139IPR001356Homeobox domain
SMARTSM003895.6E-1882143IPR001356Homeobox domain
PfamPF000461.8E-1584137IPR001356Homeobox domain
CDDcd000862.23E-1784140No hitNo description
Gene3DG3DSA:1.10.10.601.4E-1986146IPR009057Homeodomain-like
PRINTSPR000311.3E-5110119IPR000047Helix-turn-helix motif
PROSITE patternPS000270114137IPR017970Homeobox, conserved site
PRINTSPR000311.3E-5119135IPR000047Helix-turn-helix motif
PfamPF021838.7E-15139178IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009744Biological Processresponse to sucrose
GO:0048826Biological Processcotyledon morphogenesis
GO:0080022Biological Processprimary root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MGSNGMPFFS SNFLLQTEDD DHHHQPPTSL NPLLPSCSPQ DFHGLASLLG KRGMSFSGID  60
HICEEVMNGE EDLSDDGLSH GGEKKRRLNI EQVKTLEKTF EQGNKLEPER KMQLARALGL  120
QPRQIAIWFQ NRRARWKTKQ LEKDYNILKR HFDAVKAENE SLIAQNQKLH SEILSLRSNN  180
RSDHPESINL NKETIIDQGS CSTRSDNSSD IHLDISRTPP AIDSPPHIRP ISIPLFPTSS  240
NHHASPAAAT TTAAAQLFFS PPITGLRTDS HNTGNNSHHV KEESSFTNMF CGMEDQSGGL  300
WPWLEQQHFN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131139RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00225DAPTransfer from AT1G69780Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021618165.11e-134homeobox-leucine zipper protein ATHB-13-like
RefseqXP_021618174.11e-134homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC031e-106ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A2C9WNB81e-133A0A2C9WNB8_MANES; Uncharacterized protein
STRINGcassava4.1_013285m1e-131(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-107HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]