PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0046s0192.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 271aa MW: 29411 Da PI: 7.1333 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 97 | 1.4e-30 | 86 | 139 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Kaladp0046s0192.1.p 86 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 139 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.059 | 83 | 142 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.33E-20 | 83 | 143 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.6E-31 | 85 | 144 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.7E-24 | 87 | 139 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 9.7E-8 | 89 | 138 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MKEDESNWFS RWEEQLPSPD ELMPLSQTLI TPHLALVFDL HNPNGISQST PPPAPTLAHP 60 SSSEFENSGD LGSGAGGDEP ARTLKRPRLV WTPQLHKRFV DAVAHLGIKN AVPKTIMQLM 120 SVDGLTRENV ASHLQKYRLY LKRMQGHSNG GGLASSDPAT DHLFASSPVP AHFLHPGGRP 180 GQDHFMPFVA PPQAGRPIWV THPQFHQQRQ VGHFGSPPSN GQFEHSIMAR QQAQPAAHRM 240 GAPPPYGDDV ESGAANGGRK VLTLFPTGDD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-32 | 86 | 142 | 1 | 57 | Transcription factor LUX |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010036386.1 | 1e-113 | PREDICTED: transcription factor PCL1 | ||||
Swissprot | O22210 | 7e-66 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A1Q3AMU9 | 1e-112 | A0A1Q3AMU9_CEPFO; Myb_DNA-binding domain-containing protein | ||||
STRING | XP_008387427.1 | 1e-116 | (Malus domestica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 3e-92 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0046s0192.1.p |
Publications ? help Back to Top | |||
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