PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0505.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 435aa    MW: 48192 Da    PI: 8.2023
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0505.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.57.2e-113358126
                         --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                         +++++C +f+rtG C yG +C+++H+
  Kaladp0045s0505.2.p 33 PGEPNCIYFLRTGSCGYGTNCRYNHP 58
                         5789*********************9 PP
2zf-CCCH40.83.7e-1378103227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          +++ C ff++tGtCkyG++Ck++H++
  Kaladp0045s0505.2.p  78 GEPDCGFFMKTGTCKYGSSCKYNHPR 103
                          6899********************96 PP
3zf-CCCH36.96.3e-12126148527
                          --SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                          +C +++rtG+Ck+G+ CkF+H++
  Kaladp0045s0505.2.p 126 PCTYYMRTGQCKFGPACKFHHPE 148
                          8********************96 PP
4zf-CCCH37.44.4e-12269294227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          ++++Cr+f+ +GtCkyG+ Ck++H++
  Kaladp0045s0505.2.p 269 DQPECRYFMNSGTCKYGPDCKYNHPR 294
                          689*********************96 PP
5zf-CCCH30.75.4e-10314338125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          ++++lC+ ++ +G+C+ G++CkF+H
  Kaladp0045s0505.2.p 314 PGQPLCSSYSTYGICSNGPTCKFHH 338
                          589********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.6853260IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-53259IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-83458IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-53760IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-43858IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.83176104IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-776103IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-1078103IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-681104IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-482103IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.197121149IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-6121149IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-7122148IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9126148IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5126147IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5267294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.615267295IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9269294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6270297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-6273295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6312339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.868313341IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-4313340IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7315338IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4318340IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MDEWMFVEPS IRPKMHNKYK HQEGAVTDYP DRPGEPNCIY FLRTGSCGYG TNCRYNHPTH  60
VAQDVVYGLG GELPERDGEP DCGFFMKTGT CKYGSSCKYN HPRDRNDGSP VSFNILGLPM  120
RSEGNPCTYY MRTGQCKFGP ACKFHHPEPA FPGLVFPVFG TTHLGSTESS NLHIRTFPAL  180
PIPAAAYVYD PQTQTQQPYM PLAVSPSQGF LPQQGWSTYQ RNMSPVSSTN TRGSSPSYNS  240
SSRCLGASGS NGQVHYLSFF TPPYPERPDQ PECRYFMNSG TCKYGPDCKY NHPRERIAQM  300
LPQPVNPLGL PFRPGQPLCS SYSTYGICSN GPTCKFHHQV SGYPLNCGLS PFPLPLPMPV  360
FDEPIFGRRS STVVISSETS SPSKSPKDLD WMRKPESATE RSRHLGTNGL QKSHDEEAGT  420
MRNSSPASST KKHD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002275775.11e-144PREDICTED: zinc finger CCCH domain-containing protein 3
TrEMBLD7TEE81e-143D7TEE8_VITVI; Uncharacterized protein
STRINGVIT_12s0059g01450.t011e-144(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.24e-99C3H family protein