PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0045s0488.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | MYB | ||||||||
Protein Properties | Length: 431aa MW: 47925.1 Da PI: 6.5446 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49 | 1.4e-15 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ E +l d+v ++G g+W+++ r g+ R++k+c++rw ++l Kaladp0045s0488.1.p 27 KGPWTAAENAILFDYVSKHGEGNWNAVQRNSGLQRCGKSCRLRWANHL 74 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 54.3 | 3.1e-17 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l+++++++lG++ W++ a+ m+ gRt++++k++w++ Kaladp0045s0488.1.p 80 KGAFTPEEERLILELHAKLGNK-WARMAAQMP-GRTDNEIKNYWNT 123 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.016 | 22 | 74 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.25E-30 | 25 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.3E-12 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.0E-13 | 27 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-22 | 28 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.14E-9 | 29 | 74 | No hit | No description |
PROSITE profile | PS51294 | 25.889 | 75 | 129 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-16 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-16 | 80 | 123 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-12 | 82 | 123 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-26 | 82 | 127 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MASSSSHDTT PARSSSGAGE EGVALKKGPW TAAENAILFD YVSKHGEGNW NAVQRNSGLQ 60 RCGKSCRLRW ANHLRPNLKK GAFTPEEERL ILELHAKLGN KWARMAAQMP GRTDNEIKNY 120 WNTRMKRHQR AGLAICPTHI HSGQHRQHRL QRHRKQHHAL KSTSHTQMLD FQNQRAVSFN 180 QTSQPQSYLF TAHQAPIPSQ FNFFMEQSNS NSQSYHTSLS PAVASHSLLL NNNPPHLPPH 240 QSNYHQDPPD SSADFGFVRL LSDHRSDGML DDGFYAVEFG NENSNNQLFQ PTFKNMKEDE 300 GHQGAVTMKE TTPENSSSGL TSIGVMVVEP EPEPEPEPEP VVDIINPLED ELTSLIDSFP 360 AASPTPQWYR RGSTMAEINN SSGDANGEVV LDLCPTHQLI MPSLEAEATD QVLSLGGSTS 420 MLWHELPSIY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 25 | 127 | 5 | 106 | B-MYB |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 8e-69 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0045s0488.1.p |