PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0475.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family HD-ZIP
Protein Properties Length: 778aa    MW: 85650.8 Da    PI: 5.4246
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0475.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-20103158156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Kaladp0045s0475.2.p 103 KKRYHRHTQHQIQEMESFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 158
                          688999***********************************************998 PP
2START208.92e-652985191206
                          HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S... CS
                START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla... 77 
                          ela +a++el+++a+ +ep+Wv s+     + +n+de+ ++f +  +     + +ea+r+s++v+m++ +lve+l++ + qW +++    
  Kaladp0045s0475.2.p 298 ELAVAAMEELLRMAQMGEPLWVPSVdgsasSLLNEDEYNRNFHRCIGptpagFITEASRDSAIVIMNHGNLVEILMEAN-QWMTMFSgiv 386
                          57899********************99999999*********9988899******************************.********** PP

                          .EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
                START  78 .kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                           +a+tlev+s+g      galq+m+aelq+ +plvp R+ +fvRy++q+g+g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ 
  Kaladp0045s0475.2.p 387 sRAMTLEVLSTGvagnfnGALQVMTAELQVATPLVPtREIYFVRYCKQHGDGVWAVVDVSLDNLRPSP----IARCRKRPSGCLIQEMPS 472
                          ******************************************************************99....7***************** PP

                          CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          g+skvtwve+v++++r +h+l+++lv+sgla+ga++wv tl+rqce+
  Kaladp0045s0475.2.p 473 GYSKVTWVENVEVDERGVHNLYKPLVNSGLAFGARRWVGTLDRQCER 519
                          *********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-2285158IPR009057Homeodomain-like
SuperFamilySSF466898.36E-2087160IPR009057Homeodomain-like
PROSITE profilePS5007117.2100160IPR001356Homeobox domain
SMARTSM003893.8E-19101164IPR001356Homeobox domain
PfamPF000465.3E-18103158IPR001356Homeobox domain
CDDcd000865.60E-19103161No hitNo description
PROSITE patternPS000270135158IPR017970Homeobox, conserved site
PROSITE profilePS5084842.932289522IPR002913START domain
SuperFamilySSF559611.87E-34289521No hitNo description
CDDcd088751.80E-122293518No hitNo description
SMARTSM002341.8E-57298519IPR002913START domain
PfamPF018524.0E-54299519IPR002913START domain
Gene3DG3DSA:3.30.530.205.5E-5398517IPR023393START-like domain
SuperFamilySSF559618.49E-21537769No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MPAGIMLPAT MIGINGDNIN SVDSFVNSSL GQMNMFQQNL MMDPQQPYHH SLEMMNPNNI  60
NSHSNGIEND HLNEFESKSG SENLEGVSGD DQTDPNQQPN KKKKRYHRHT QHQIQEMESF  120
FKECPHPDDK QRKELSRELG LEPLQVKFWF QNKRTQMKAQ HERHENTQLR NENEKLRAEN  180
MRYREALANA SCQQCGGPTA VGEMSFDEHQ LRLENARLRE EVDKISAIAA KYVGKPLNNY  240
SYPLLSPPVP SRSLELAFPF SGEATMGGAE MFGPASDHLI RSINEQQPTE ADKPMIVELA  300
VAAMEELLRM AQMGEPLWVP SVDGSASSLL NEDEYNRNFH RCIGPTPAGF ITEASRDSAI  360
VIMNHGNLVE ILMEANQWMT MFSGIVSRAM TLEVLSTGVA GNFNGALQVM TAELQVATPL  420
VPTREIYFVR YCKQHGDGVW AVVDVSLDNL RPSPIARCRK RPSGCLIQEM PSGYSKVTWV  480
ENVEVDERGV HNLYKPLVNS GLAFGARRWV GTLDRQCERL ASSMATYVPN GEGVFTNEEG  540
RRNMMKLAER MVMSFSAAVS ASITHTWTTL SGTGADDVRV MTRKSIDDPG RPPGIVLSAA  600
TSFWVAVPPS RVFDFIRDEN CRNQWDILCD GGVVHEMAHI TNGREAGNCI SLLRVNGANA  660
NQSNMLILQE SCSDATASFV IYAPVDFGAM NSVLSGGDPD YVPLLPSGFA IYPDGPVGHG  720
EVAGPKRAGG SLLTVAFQIL VDSQPTAKLS LGSVATVNQL ISSTVERIKE ALTGQSS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010657311.10.0PREDICTED: homeobox-leucine zipper protein HDG2 isoform X4
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLD7TEM30.0D7TEM3_VITVI; Uncharacterized protein
STRINGVIT_12s0059g02310.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2