PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0285.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 512aa    MW: 55763.1 Da    PI: 8.3683
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0285.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-057698123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C+k F r  nL+ H r H
  Kaladp0045s0285.1.p 76 FVCEICNKGFQRDQNLQLHRRGH 98
                         89*******************88 PP

2zf-C2H215.64.6e-05152174123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H++t+
  Kaladp0045s0285.1.p 152 WKCDKCSKKYAVQSDWKAHQKTC 174
                          58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.59E-87598No hitNo description
Gene3DG3DSA:3.30.160.601.7E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121718.2E-57698IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497698IPR007087Zinc finger, C2H2
SMARTSM003550.0177698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM00355100117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.9E-5140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.59E-8147173No hitNo description
SMARTSM0035594152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MSNLTGEDGS FTSAANSCED DEAHQQRQTQ AAAGSSNDGS LQLPPLKKKR NLPGTPDPTA  60
EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSNA EVKKRVYICP  120
EPSCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK  180
CDCGTIFSRR DSFITHRAFC DALAEENSKV NQGQQQEKDV AGSNHSHDAQ AVQELISSSL  240
PHFGSFDPKN PLKSMPQELV PMPFRAMNGM FSTSSGTVFS NPRAHSPSTL QLSSISSTSF  300
SSYLQQFGGS TPNAYTSATA LLQKAAQMGA TTASNTINSP MMHKSYNVSN MAGAADQGLM  360
TGYVPVFESQ QQPRQYQSHQ QMLLGGGFGT DQQMLEAATN GSSTAMDEQM SMFSGLFMNG  420
RGGGDPGHSS GGLFRGIEQA ESVGGSSGTN MARPGLSMTD RSMSTFEGHG DLIPTVDFLG  480
VGGSRPPNFH QQQHPQQERF EMEVTNHHQS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-34148211366Zinc finger protein JACKDAW
5b3h_F9e-34148211366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028085273.11e-180zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9SCQ61e-116IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3N7FC771e-172A0A3N7FC77_POPTR; Uncharacterized protein
STRINGXP_006480107.11e-170(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-104indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]