PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0045s0285.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | C2H2 | ||||||||
Protein Properties | Length: 512aa MW: 55763.1 Da PI: 8.3683 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Kaladp0045s0285.1.p 76 FVCEICNKGFQRDQNLQLHRRGH 98 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.6 | 4.6e-05 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ Kaladp0045s0285.1.p 152 WKCDKCSKKYAVQSDWKAHQKTC 174 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.59E-8 | 75 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 75 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 8.2E-5 | 76 | 98 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.949 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 100 | 117 | 147 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 5.9E-5 | 140 | 173 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.59E-8 | 147 | 173 | No hit | No description |
SMART | SM00355 | 94 | 152 | 172 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MSNLTGEDGS FTSAANSCED DEAHQQRQTQ AAAGSSNDGS LQLPPLKKKR NLPGTPDPTA 60 EVVALSPTTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRSNA EVKKRVYICP 120 EPSCVHHNPA RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK 180 CDCGTIFSRR DSFITHRAFC DALAEENSKV NQGQQQEKDV AGSNHSHDAQ AVQELISSSL 240 PHFGSFDPKN PLKSMPQELV PMPFRAMNGM FSTSSGTVFS NPRAHSPSTL QLSSISSTSF 300 SSYLQQFGGS TPNAYTSATA LLQKAAQMGA TTASNTINSP MMHKSYNVSN MAGAADQGLM 360 TGYVPVFESQ QQPRQYQSHQ QMLLGGGFGT DQQMLEAATN GSSTAMDEQM SMFSGLFMNG 420 RGGGDPGHSS GGLFRGIEQA ESVGGSSGTN MARPGLSMTD RSMSTFEGHG DLIPTVDFLG 480 VGGSRPPNFH QQQHPQQERF EMEVTNHHQS R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 9e-34 | 148 | 211 | 3 | 66 | Zinc finger protein JACKDAW |
5b3h_F | 9e-34 | 148 | 211 | 3 | 66 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028085273.1 | 1e-180 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9SCQ6 | 1e-116 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A3N7FC77 | 1e-172 | A0A3N7FC77_POPTR; Uncharacterized protein | ||||
STRING | XP_006480107.1 | 1e-170 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-104 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0045s0285.1.p |
Publications ? help Back to Top | |||
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