PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0045s0272.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | CO-like | ||||||||
Protein Properties | Length: 389aa MW: 43181.3 Da PI: 5.2413 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 24.9 | 4.1e-08 | 20 | 64 | 3 | 41 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 r+C+ ++e + l+C+ ++ lC C e H+ Ht+++ Kaladp0045s0272.1.p 20 RRVCDFCSESTAVLYCRADSAKLCLACDREVHSTnplftkHTRTQ 64 689******99*********************7689999998765 PP | |||||||
2 | zf-B_box | 25.6 | 2.6e-08 | 64 | 97 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHt 38 + C+ ++e ++++ C +++ lC++C +H +H+ Kaladp0045s0272.1.p 64 QLCDACDESPVTILCSTDDLVLCQNCDWDTH-SHK 97 78****************************9.776 PP | |||||||
3 | CCT | 62.1 | 1.8e-21 | 343 | 386 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R+ al+RYkeK+++R+++K+irYesRK++AesR R+KGrF+k++ Kaladp0045s0272.1.p 343 RDTALSRYKEKKRNRRYDKHIRYESRKVRAESRTRIKGRFAKST 386 899***************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 10.651 | 18 | 65 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.0E-13 | 18 | 65 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 9.5E-7 | 20 | 63 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 7.38E-8 | 21 | 65 | No hit | No description |
PROSITE profile | PS50119 | 9.214 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 5.1E-6 | 64 | 97 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.55E-6 | 65 | 108 | No hit | No description |
SMART | SM00336 | 0.22 | 66 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF06203 | 1.8E-15 | 343 | 385 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 14.753 | 343 | 385 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MGDLVAQTGV GDDGDQMLKR RVCDFCSEST AVLYCRADSA KLCLACDREV HSTNPLFTKH 60 TRTQLCDACD ESPVTILCST DDLVLCQNCD WDTHSHKSEM SVHDRKFLEG FSGCPKVCEL 120 MLVLGLEGLG KKALLGSGEE SEREGFDQSG GYGFSDFLVW DTPTVFNLDD LIGGVDSSCG 180 FGDAEAQALP SPKVTKATSG KHKEEIIRQL REMAKSEPGF SYDCEDVDPL DGINGAERVL 240 QPRDVHVEHD EKPSIRDAYE VNENGLRWLS ESNKHSVQVF IPKLSKTATE DGLGLVPEKP 300 SDAGVCPSQG TDGHAEVFSV PIKTDILPYV PKVYTHEFNS QERDTALSRY KEKKRNRRYD 360 KHIRYESRKV RAESRTRIKG RFAKSTDQ* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002268490.1 | 1e-114 | PREDICTED: zinc finger protein CONSTANS-LIKE 13 | ||||
TrEMBL | A0A438KI97 | 1e-113 | A0A438KI97_VITVI; Zinc finger protein CONSTANS-like 13 | ||||
STRING | VIT_07s0104g01360.t01 | 1e-113 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47890.1 | 4e-76 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0045s0272.1.p |