PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0045s0160.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 343aa    MW: 35907.2 Da    PI: 5.819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0045s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015217239123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Kaladp0045s0160.1.p 217 HECSICGSAFSSGQALGGHMRRH 239
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.19E-9140163No hitNo description
PfamPF139122.5E-11140166IPR007087Zinc finger, C2H2
SMARTSM003550.3141163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.097141168IPR007087Zinc finger, C2H2
PROSITE patternPS000280143164IPR007087Zinc finger, C2H2
SuperFamilySSF576671.19E-9212239No hitNo description
Gene3DG3DSA:3.30.160.605.8E-5215241IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.5E-11216241IPR007087Zinc finger, C2H2
SMARTSM003550.022217239IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.949217244IPR007087Zinc finger, C2H2
PROSITE patternPS000280219239IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MNFEAVMESA EVESSATGEF AAGASPQIAK RKRTKRRRIA VSSSSSGGGD NNKQGCVAAS  60
EEEEEEDRNY ESTVTTATEE EEDMANCLIL LARSGGDGGF GVVNREDSVK TERKRKTTIG  120
SRKSAEASSV AGVGGGGVGV YECRTCDKAF QSFQALGGHR ASHHKKAKVT ATADVTPEEV  180
KLVDQIQLLS SFSPQPVIHL KPSSSSSSAA AHSSKVHECS ICGSAFSSGQ ALGGHMRRHR  240
GAVTNDNNQI APAAAVAESS SHREEGIVVT ERDMSSSNNN NNFLSSLDLN LPAPADEEDE  300
QRRSSYHEQF AGGQGNSNSS STAAPATAAL VFSAPPLVGC YF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13438KRRRI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.16e-29C2H2 family protein