PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0044s0056.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | HB-other | ||||||||
Protein Properties | Length: 960aa MW: 105651 Da PI: 7.7128 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 19.8 | 1.3e-06 | 71 | 126 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++R ++++ + ++++F+ + ++s++e +e++++ g+t +qV+ +F +R + + Kaladp0044s0056.2.p 71 KKPRDLLNPKAVAYMQSVFAIKDKISKKETREISAQFGITLSQVRDYFASQRSRVR 126 79999***********************************************9977 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.22 | 68 | 128 | IPR001356 | Homeobox domain |
SMART | SM00389 | 8.5E-4 | 70 | 132 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.97E-5 | 71 | 126 | No hit | No description |
SuperFamily | SSF46689 | 1.97E-6 | 71 | 130 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.5E-7 | 71 | 137 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 960 aa Download sequence Send to blast |
MDGLSARLAA EEEGIGTSME SFQKCLESQK DLFHSQLIEM KRIVSAQCKL TGVNPLSQEM 60 AAGALSIAIG KKPRDLLNPK AVAYMQSVFA IKDKISKKET REISAQFGIT LSQVRDYFAS 120 QRSRVREIVQ SSQEVSRDKS KMLKDLQNGN HENKGSTMHS DPGPFIDAGP VTCDTNIANA 180 VKPEINETAA SSASRPTETD IGTARCDSPE FSLATCIPVT DEDDVTDEPS RSEIATHKST 240 ASTYAEPVPL NVVPPTISET PASNSSGICD ARMQPKLTKG EVLPELDGSD KNFVENIFNL 300 MSKEETFSGQ VNLMEEILKI ESPSVLDWFL SKGGVMILAT WLRQAAVEEQ TSVLHIILKV 360 LCHLPLAKAL PEKMSVILQS VNSLRFYRSQ DISNKARICL ARWSKLFAKS QPMMKLNGVK 420 SQIEVAKLKL LTESINEING DESRQSELEN TDGSLTSSNQ ATENLRKRER PLQMEMLTAS 480 PEDSVKRISM GLSSSQGKGR RKVQLVEHIG QRAIGSSQQA VRASVSQSRP MSTDDIQKAK 540 LRKEVMEAKY GKKKSEPGSH KPGVPSAIVQ ASRVPTQPVP HERRNSKLPL PKNLTEHKPP 600 VTPHPYQTDE KKQNLLPLEN KDELKQPMVP LQNSTVGLKQ PTASFANNTD EQPMMQAVKS 660 IVEQMQTVVP LLNSNMKSQV LPENIAEQIQ ATVSISRSTA EPQVNSNGSA EKREQIISIS 720 NSIVQKVPRP KKTIPETKEP FWKQCKRVQI PWKTPPEMVI DTEWRVGSGQ NSRELRDQKV 780 RNKREKEFVY QRHEEIPPNP KNPWENEIDY DDTLTPIIPT EQLIDTSDPL QSQNSISVET 840 GNTSQMGSVA HTPAPSSLTG TVSGSEHDPV LLNALLKNPA LVFKLTSGQT ANMTSEDTVR 900 LLDMIKATAG AFPIGNVTHN LSNGSRVSEE RVEGSLPSPT PSSNFGTVRD SGLCCITCK* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02560.2 | 1e-116 | HB-other family protein |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0044s0056.2.p |