PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0043s0229.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | LBD | ||||||||
Protein Properties | Length: 183aa MW: 20061.6 Da PI: 6.8591 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.8 | 2e-39 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk lrrkC++dC+l+pyfp+++p++fa vhk+FGa+n++k+l+++p + r +a++++++eA r+rdP+yG+vg+i++lqqq+ q+ Kaladp0043s0229.1.p 10 RCAACKCLRRKCPADCILSPYFPSSNPQRFASVHKVFGAANITKMLEQVPMHLRGQAAECMIFEAATRTRDPIYGSVGIISQLQQQITQV 99 6***************************************************************************************** PP DUF260 91 kaelallke 99 ++e+ +++ Kaladp0043s0229.1.p 100 QNEIMKIRG 108 ***998776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.198 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-39 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MSHYHSSSTR CAACKCLRRK CPADCILSPY FPSSNPQRFA SVHKVFGAAN ITKMLEQVPM 60 HLRGQAAECM IFEAATRTRD PIYGSVGIIS QLQQQITQVQ NEIMKIRGEI ALQSAQQQHN 120 QTQTTLRMEQ LSDQSGLDVG PDIGLGLDVD TGPSSGADAG SSSGRHYEMD LDEFYAKFNH 180 QP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-33 | 11 | 103 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-33 | 11 | 103 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011046521.1 | 1e-52 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 3e-41 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A2K1YZY8 | 5e-51 | A0A2K1YZY8_POPTR; Uncharacterized protein (Fragment) | ||||
STRING | XP_010278070.1 | 2e-49 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G31320.1 | 1e-26 | LOB domain-containing protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0043s0229.1.p |