PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0043s0153.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 666aa    MW: 73662.4 Da    PI: 4.8469
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0043s0153.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-07110132427
                          ---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                          ++C ff++ G C  GdrC F Hgp
  Kaladp0043s0153.1.p 110 VPCIFFQK-GLCLKGDRCAFLHGP 132
                          69******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.2161645IPR000571Zinc finger, CCCH-type
PfamPF156631.4E-111670No hitNo description
SMARTSM003560.00141744IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.9814773IPR000571Zinc finger, CCCH-type
SMARTSM003560.34972IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.605106133IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5106132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.05E-5107131IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-4110132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5111132IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MVPDTNQPAA PEDEASKRNT DCVYFLASPL TCKKGSECEF RHSEYARVNP RDCWYWLNGS  60
CLNPKCAFRH PPLGGLLGTQ AAVSAGTALA SPQAVAPTPP VAASQSKQAV PCIFFQKGLC  120
LKGDRCAFLH GPNSVATKPP QSAPPSAGVT GSRSVFTITQ GSSEPNNSDL NMYTDVKSVP  180
KVSNAQPKAN AMAERVVFPS RGFNDEKLSY KSTTVAPLPS GSNILSSNRM YETEKPDDHV  240
TLNDKEADDF YRESSPGFDV LVDDELAEDQ YYDEDHYGAA VAGEGKNMKD LDSLPDVDHE  300
MFERSYDGFD RVSAQYSRDK RRISSERTLR GSASLEGRND NKEGRSDRIG QTDLRHRLKQ  360
KKGGGLRSVI SNNNHDERRS ADSRRDSWLT TPPESSLSGR LQGRIRDIQS PPVRGVFSDR  420
DSERGRNIRR KSPGRTRIHD RIGTRVHDDF GNERNSRGYE GRIEGSEDGV DEFSGPKKLS  480
ELKACKSSVK DRLMSGQESF SLGKRKSTGE HEQLDSDLSF EGPKPLSEIL KRKKRSEMNA  540
PGTVSSEHKV TNETKSSENS SINKEEPKSA ADVSEKRTEP DHTQPFEAPN SDQVDQEEGI  600
IADEGMEDQN FEGHNQGEGG EEYYYEDGEE YNLEDENIDG ENIEGEYADE EDGDDFEKKI  660
GGMFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015895883.11e-164zinc finger CCCH domain-containing protein 17
STRINGXP_008220996.11e-162(Prunus mume)