PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0043s0027.3.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 1592aa    MW: 176412 Da    PI: 8.6829
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0043s0027.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.85.9e-0614661487627
                           -SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                           C+ f +tGtC+ G++Ck +H++
  Kaladp0043s0027.3.p 1466 CHVFEETGTCPQGSKCKLHHPK 1487
                           *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.55813571385IPR000571Zinc finger, CCCH-type
SMARTSM003560.1913581384IPR000571Zinc finger, CCCH-type
SMARTSM003565.313851409IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.01413891410IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.29114111437IPR000571Zinc finger, CCCH-type
SMARTSM003560.03214111436IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.03714381465IPR000571Zinc finger, CCCH-type
SMARTSM003560.1514381464IPR000571Zinc finger, CCCH-type
SMARTSM003561.414651487IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.26814661488IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1592 aa     Download sequence    Send to blast
MRDVHRHPRY NPYPCQPSLP PPPLSADYPN FCTNLPQPPP PPPPDFQPPL FHHPSSPFSF  60
RSPNCTPPIE HPLDFRASRP HPDRFSVFPR DFPFSSRVPD DWEPSSTYNS GPIYQFQPSS  120
PRRVVVSQHH FTGMDLAPRY DISTIRPNTD FSRSSGDGYF GRRSISSVSS HSDIAHRGWS  180
SKRQHLQDTP NSSSGVRLDE GVGAPPRNWG NPRYSSRANY LDPPRKVQKK SALFRIQMGN  240
SVHSNYSHMK SRISGRCRSG KTSAFEVNCS SPAKHRNTKE GGNARTEGNP AHMSFKSNSL  300
VAKQSITPSS PTNTTDKDFT PRNRKFGKLT APDSMKLGIS GHSAENSSRH LKTNEQTVGS  360
ECDIVCETDC DKADRFDKEI CVEGFNASSG KSMAMLEKRN KLLHDQTPSD KLADNQSWEV  420
SLLTPKTYIN CKGSDESCQL EPEMPTGTGS GLIGIACSAT TVVSVDDLSH HPFHQHVDVA  480
TRVNSLMPYC GNQLANIESP VLKDCIHEEV VSDIPAAEVS EIDRPEYLQA KKLISPLETD  540
VPFNTVVDQS CSEDATENDI IEEHAMPISA DENNNLHQDN GICMTNMKKR KETSIQYEIS  600
DWTPTATALE RDLIDKVVFD FSNGDCMSPN QAEMEKELIC VVDKGLTPVD VSVTDFEVTS  660
TQSKGAAQVG LRGGGSTLVP GSPRAMISHN EGFSHGISKI VQGSSESSRG MEITTSKTVA  720
TADSDPDIPS TMASLERVAK GQITYFNTLF DLKSNDMAPG DDKKEVNNSV ARTNSGHTML  780
VESLPLPNVV TPAHISSISS THNQVFSNAT SERLKCHRNY VLPVPFRTSS SLYFTSPKIE  840
EAHKVRMVKS RTWHRSKIDV PLPDKMSASN VVHSRCHLMK GRKPQSTSYI RKGNSLVRNP  900
SPVVNVSGGA QDSTSVTQPS FPNDQAFFEN KFYDTIEPNQ SGTSDDKVNI QRYEACQLLE  960
KTTPTVSNCS PVESPCLSPM SPVVNCSSEI NSGPMGSPDD TGLVQFHDEM KQKKVTENQI  1020
VALNSLGTQT AVDKGSISAK PDSIMYLKHN SYQLVAASGP SHLSVEKAQD AQILSSDGYY  1080
KMKNNQIIRT PLDTAQPPPV SGGNLNTEGL HAENMFTGPS TLQSYKGTMH KSSNSSLVWT  1140
LHGAQPTSKM PQGQVRCKRA TSWRDMRNSG ASLINRSSLM IRMLTLCRCR NTIYKRSTNG  1200
LSLRKYKVLA LDGYSLKWSK SIERRSKKAS EDATRAVVAA ESKKREQNRL QRTMSKEKNK  1260
LHSSRGRIFR IGAVRYRMDP SRNTLQRIID GGSQPGALED ADSKGFYVPK RLVIGKDEYI  1320
RIGNGNQLIR DPKKRIRMLA NEKIKWSLHN VRLRLVKKRR FCQFYTRFGK CNKDDGKCPF  1380
IHDSSKIAVC TKFLKGICFE PNCKLTHKVI PERMEDCAYF LLGMCSNESC PYRHVNVNPN  1440
ATTCEGFLKG YCADGDECQK KHSYVCHVFE ETGTCPQGSK CKLHHPKKRK VKQTNFRMQN  1500
SAKGRYFGSP PPGVGPQTVV LMKHLTASSA NIFEDGYIPD FISLHGGGDN DVEDISCASE  1560
NVDNFMDIEV CDLDTLIKPV GIMNKDLGKN T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C2e-161362148741168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C2e-161362148741168Cleavage and polyadenylation specificity factor subunit 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-