PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0042s0243.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

G2-like

Protein Properties

Length: 272aa MW: 29441.1 Da PI: 6.7236

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0042s0243.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.1	4e-33	16	70	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+ Lt++hvkSHLQkYRl Kaladp0042s0243.1.p 16 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRAMGVEELTIYHVKSHLQKYRL 70 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.846	13	73	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-17	14	70	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.7E-32	14	71	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.0E-25	16	71	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-8	18	69	IPR001005	SANT/Myb domain
Pfam	PF14379	5.9E-23	101	147	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MDRPGGGKNS PSVSSKQRLR WTHELHERFV DAVAQLGGPD RATPKGVLRA MGVEELTIYH 60 VKSHLQKYRL AKYLPDSSDG NKVDKKESGD PQSGLEDSSG MQITETLKLQ MEVQKRLHEQ 120 LEVQRQLQLR IEAQGKYLKK IIEEQQRLSG VLAGSSASDC LSGGLDCDKI DPPTPAPTSE 180 LPLQEKLPKD AAPVKSLSLE ESLSSPNEPL TPDSGCNADS PLSSPQNERS TKKQRVNKDA 240 PSAMPPGMGI SHHILESSDG GLSSAQFGHP L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	7e-23	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-23	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-23	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-23	16	73	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449962.1	1e-123	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	1e-113	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	V4UB20	1e-122	V4UB20_9ROSI; Uncharacterized protein
STRING	XP_006449962.1	1e-122	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	8e-93	G2-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0042s0243.1.p