PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0042s0142.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Dof

Protein Properties

Length: 474aa MW: 51479.9 Da PI: 5.9562

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0042s0142.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.4	6.3e-38	111	169	2	60
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 +ek ++cprC s ntkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+g+rknk+ Kaladp0042s0142.1.p 111 PEKVIPCPRCSSFNTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGKRKNKQ 169 78999****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-28	104	168	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-31	113	169	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	115	169	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	117	153	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence Send to blast
MSEVRDPPIK LFGADIHFPE TSPSSDDADL LIPSPSESAA DRCQITRDQC EILSPIREPV 60 KYDGPPSTSH GEERKRIGHA AGDGVNKDCA LKDDQCVETD PDSQEKVLKK PEKVIPCPRC 120 SSFNTKFCYF NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGKRKNKQL PLQYNQVATS 180 SEGVAQADSL VSSSHLVQPN LSLSIPLTSV DGNDETGICE SMVSMFSQND PRTVELGSIR 240 AADEPSSSIS SISSTSLNEL ELPNQEASQF KSSGLYYGST PSIPLPYYTN PQWTYPWVPV 300 ACWKQPVEPI QTIPVPMEDA PLKCTPGISF PVIPYLGCIP VFNGSASTVP LAGCSEHPSL 360 PCATDCSYTS SSSPNLGKHL RETIVSTEEK TENCLWVPKS KKIDDMDTAA KCSILNSLGL 420 NPGKNKSIPK AGVFKAFQPK PESSKQSKTE ETAPVLKANP AALSRSQKFQ ENT*

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence Send to blast

MSEVRDPPIK LFGADIHFPE TSPSSDDADL LIPSPSESAA DRCQITRDQC EILSPIREPV  60
KYDGPPSTSH GEERKRIGHA AGDGVNKDCA LKDDQCVETD PDSQEKVLKK PEKVIPCPRC  120
SSFNTKFCYF NNYNVNQPRH FCKNCQRYWT AGGTMRNVPV GAGKRKNKQL PLQYNQVATS  180
SEGVAQADSL VSSSHLVQPN LSLSIPLTSV DGNDETGICE SMVSMFSQND PRTVELGSIR  240
AADEPSSSIS SISSTSLNEL ELPNQEASQF KSSGLYYGST PSIPLPYYTN PQWTYPWVPV  300
ACWKQPVEPI QTIPVPMEDA PLKCTPGISF PVIPYLGCIP VFNGSASTVP LAGCSEHPSL  360
PCATDCSYTS SSSPNLGKHL RETIVSTEEK TENCLWVPKS KKIDDMDTAA KCSILNSLGL  420
NPGKNKSIPK AGVFKAFQPK PESSKQSKTE ETAPVLKANP AALSRSQKFQ ENT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47500.1	2e-56	cycling DOF factor 3

Link Out ? help Back to Top
Phytozome	Kaladp0042s0142.1.p