PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0042s0045.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family B3
Protein Properties Length: 449aa    MW: 49565.6 Da    PI: 9.2013
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0042s0045.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.42.3e-1736120898
                          -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                   B3   8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                          + +++sgrl +p kf ++++gk  +++ + l  + g++W+v l   ++ ++ +l +GW++Fv++  ++ gD++vF+++g+ +f   v +f
  Kaladp0042s0045.2.p  36 APHSSSGRLEIPHKFNQHIEGK--TNVWVLLSGRGGKVWRVGL--VRQHQTLFLNEGWSGFVRDSSVELGDTLVFEYNGDWQF--EVYIF 119
                          6678899********9888888..677899999**********..9*******************************998888..88888 PP

                          - CS
                   B3  98 r 98 
                          +
  Kaladp0042s0045.2.p 120 D 120
                          7 PP
2B3443.9e-14276366598
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                          ++  +v+ s  l +p kf +eh   ++++++++l++ +g  W+v+   + k  + +++ +GW  Fv+an++++gD ++F+l+++   +++
  Kaladp0042s0045.2.p 276 MKIFNVSGSFTLKIPYKFSTEHL--PQCKTKVVLQTCEGSCWTVNSVPTTKVHTcHTFCGGWVAFVRANHIEAGDACIFQLVSE--CKML 361
                          55557888899***********6..458899**************955333333588889********************9874..3358 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          v++++
  Kaladp0042s0045.2.p 362 VHILK 366
                          88875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-2323124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-2324124IPR015300DNA-binding pseudobarrel domain
CDDcd100171.26E-1529120No hitNo description
PROSITE profilePS5086314.28329122IPR003340B3 DNA binding domain
SMARTSM010191.5E-1331122IPR003340B3 DNA binding domain
PfamPF023626.2E-1535121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-21264366IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-22265366IPR015300DNA-binding pseudobarrel domain
CDDcd100174.61E-18270366No hitNo description
PROSITE profilePS5086312.167272368IPR003340B3 DNA binding domain
PfamPF023621.8E-12272366IPR003340B3 DNA binding domain
SMARTSM010194.8E-7272368IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MRNSAKQKQA SKMATATTSA VKSSDGRKPH FIVTFAPHSS SGRLEIPHKF NQHIEGKTNV  60
WVLLSGRGGK VWRVGLVRQH QTLFLNEGWS GFVRDSSVEL GDTLVFEYNG DWQFEVYIFD  120
GSGCEKEVRE CMGNLGSNSR KRRERDEDES SGCVVKKKES IVCRSCNVDC VNEEPADLST  180
AECHPGAPVG EPLALIVYEE PGPSNLINGH PNYPPATALP SLCKFQSGTS GSTTKYKDVA  240
YKYTSQGKGS KLKFSASEEK ISRSFKSEFP HFVRVMKIFN VSGSFTLKIP YKFSTEHLPQ  300
CKTKVVLQTC EGSCWTVNSV PTTKVHTCHT FCGGWVAFVR ANHIEAGDAC IFQLVSECKM  360
LVHILKEGRQ ISESNGGEKS KFRSLASLSN DIKKLGLGSK NSSHGYGLPQ EAVDWKAGKC  420
LSLKLLLKCR HFFLKQIIKM KSVGVTEN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.14e-15B3 family protein