PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0646.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 275aa    MW: 31173 Da    PI: 5.8468
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0646.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM965.8e-302810751128
                  NAM  51 vkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +k + +ewyfFs rd+kyatg r+nrat+ gyWkatgkd++v++   ++ +vg++ktLvfy +rap+g kt W+mhe+r 
  Kaladp0040s0646.2.p  28 AKLNASEWYFFSFRDRKYATGYRTNRATTCGYWKATGKDRTVYDPdtSEVVVGMRKTLVFYLNRAPSGIKTGWIMHEFRH 107
                          344678**************************************9666777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.1071126IPR003441NAC domain
SuperFamilySSF1019413.27E-3824126IPR003441NAC domain
PfamPF023651.4E-1434106IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MNTHGKELNL FGSCFSLHGG TMQIIETAKL NASEWYFFSF RDRKYATGYR TNRATTCGYW  60
KATGKDRTVY DPDTSEVVVG MRKTLVFYLN RAPSGIKTGW IMHEFRHESP HTPPKEDWVL  120
CRVFYKSKPE ENTNTTSSSP ISPPSNTFQY NLKTSLSAST PNNTTNNEII SMTPQNNNTF  180
HKRNIVLPCE YQPQILSLNP NSLEQHIIVL EPNQLAVAPI SIAALAHTSD NDGDDFLRFL  240
WELKEDDNNA MDIVSISVDR MVFEVDDDSM VLFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-262812769169NAC domain-containing protein 19
3swm_B1e-262812769169NAC domain-containing protein 19
3swm_C1e-262812769169NAC domain-containing protein 19
3swm_D1e-262812769169NAC domain-containing protein 19
3swp_A1e-262812769169NAC domain-containing protein 19
3swp_B1e-262812769169NAC domain-containing protein 19
3swp_C1e-262812769169NAC domain-containing protein 19
3swp_D1e-262812769169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217415.13e-68protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A445FHG87e-67A0A445FHG8_GLYSO; NAC domain-containing protein 21/22
STRINGGLYMA19G34881.12e-67(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.13e-55NAC domain containing protein 74