PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0646.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family NAC
Protein Properties Length: 306aa    MW: 34895.2 Da    PI: 4.9606
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0646.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.11.8e-49101381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrF+P+deel+++yL kk++++++    +++e+d++++ePw+Lp+++k + +ewyfFs rd+kyatg r+nrat+ gyWkatgkd+
  Kaladp0040s0646.1.p  10 LPPGFRFNPSDEELICHYLYKKIANEEVLK-GTLTEIDLHTCEPWQLPETAKLNASEWYFFSFRDRKYATGYRTNRATTCGYWKATGKDR 98 
                          79*************************655.78***************88888999********************************** PP

                  NAM  91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +v++   ++ +vg++ktLvfy +rap+g kt W+mhe+r 
  Kaladp0040s0646.1.p  99 TVYDPdtSEVVVGMRKTLVFYLNRAPSGIKTGWIMHEFRH 138
                          ****9666777***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-598157IPR003441NAC domain
PROSITE profilePS5100556.16410157IPR003441NAC domain
PfamPF023656.3E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGLKDIEATL PPGFRFNPSD EELICHYLYK KIANEEVLKG TLTEIDLHTC EPWQLPETAK  60
LNASEWYFFS FRDRKYATGY RTNRATTCGY WKATGKDRTV YDPDTSEVVV GMRKTLVFYL  120
NRAPSGIKTG WIMHEFRHES PHTPPKEDWV LCRVFYKSKP EENTNTTSSS PISPPSNTFQ  180
YNLKTSLSAS TPNNTTNNEI ISMTPQNNNT FHKRNIVLPC EYQPQILSLN PNSLEQHIIV  240
LEPNQLAVAP ISIAALAHTS DNDGDDFLRF LWELKEDDNN AMDIVSISVD RMVFEVDDDS  300
MVLFP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A8e-4611587169NAC domain-containing protein 19
3swm_B8e-4611587169NAC domain-containing protein 19
3swm_C8e-4611587169NAC domain-containing protein 19
3swm_D8e-4611587169NAC domain-containing protein 19
3swp_A8e-4611587169NAC domain-containing protein 19
3swp_B8e-4611587169NAC domain-containing protein 19
3swp_C8e-4611587169NAC domain-containing protein 19
3swp_D8e-4611587169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028217415.11e-110protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A445FHG81e-108A0A445FHG8_GLYSO; NAC domain-containing protein 21/22
STRINGGLYMA19G34881.11e-109(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.12e-84NAC domain containing protein 74