PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0040s0499.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family bHLH
Protein Properties Length: 398aa    MW: 43039 Da    PI: 6.9504
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0040s0499.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88.3e-08329371754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                          ++ r+RR+ri +++  L++l+P         K++ a++L +A +Y+k L
  Kaladp0040s0499.1.p 329 AAARQRRERISERIRVLQRLVPGgH------KMDTATMLDEAANYLKFL 371
                          567*******************955......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.837322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-12328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-13328380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-5330371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-11331380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MEQIGWNVIQ PIVPDQNNAS SCSSAWRNQQ QQAAAEGVSN SYHNNGSPMY ATRMAASIVD  60
LHDFDVTTTN GNKEVDSRVG KQCAYPGLIY RLADKHQEAE TVSTIGSSLP TSNSFPQLHQ  120
NSSSSILTTN TTPLINTCSN LSANDSANNT NLLGIEGAGV SSIDALLMPS SAVSSRKRKA  180
AVGEEAQYYS YNGRLHAAGR ANIPTQFNKL DDNDENPRKR TSGEKEELTT IYDHSSSGAE  240
AVGGLSQLII PANKLAQTDC QQSIMPTSGN IISFQLGAML SPEKDAGIAE MKELVYMAAA  300
LRPVNLGVEE VVEKPTRKNV RISSDPQTAA ARQRRERISE RIRVLQRLVP GGHKMDTATM  360
LDEAANYLKF LRSQVKALEK TATFGFSSNN FLTSTHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331336RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.12e-35bHLH family protein