PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Kaladp0040s0440.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 319aa MW: 35561.1 Da PI: 5.751 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 74.4 | 1.4e-23 | 135 | 182 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++ + ls+yF+lpi++AA+eL+++lT+ K++CR++G++RWPhRk+ s+ Kaladp0040s0440.1.p 135 LTWDILSQYFYLPIAQAARELNIGLTLFKKRCRELGVRRWPHRKLMSI 182 77889****************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 18.223 | 111 | 203 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.2E-20 | 135 | 182 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence Send to blast |
MDYGLDKDNF LHAPFQPTDS SFLAMSAASS EPLDYYSDVG LQSLLEFQYE SLLLPAAADD 60 SVKMVDGESD QYDSPYASFN VTGHHLLDDS LVFERGGLSM DSNVAETELG QKGSKAKRGR 120 RRCSASVNNS AAELLTWDIL SQYFYLPIAQ AARELNIGLT LFKKRCRELG VRRWPHRKLM 180 SIKSLIKNVQ EMEKESNPAV SKETVRSAVQ VLEGQMKMME VMPDVQLEAQ TKRLRQACFK 240 ANYKKRRLMI MNGLTNSAGS ASSSSQGRYS TSSSSVNHVS SMSRTEAIEQ DFKDSEELKS 300 LLFDSLSPSE CTFLNDFI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021287140.1 | 2e-55 | protein RKD1 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18790.1 | 4e-45 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Kaladp0040s0440.1.p |