PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0040s0399.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

LBD

Protein Properties

Length: 164aa MW: 17350.5 Da PI: 7.9694

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0040s0399.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.9	1.7e-43	18	116	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk+lrrkC ++C++apyfp e+p kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l Kaladp0040s0399.2.p 18 PCAACKFLRRKCLPGCTFAPYFPPEEPTKFANVHKIFGASNVSKLLNEISPHQREDAVNSLAYEAEARIKDPVYGCVGSISVLQRQVLKL 107 7*************************************************************************************** PP DUF260 91 kaelallke 99 ++el+++++ Kaladp0040s0399.2.p 108 QKELEATNA 116 **99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.087	17	118	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-43	18	115	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MASSSSSSPS PCYYSNSPCA ACKFLRRKCL PGCTFAPYFP PEEPTKFANV HKIFGASNVS 60 KLLNEISPHQ REDAVNSLAY EAEARIKDPV YGCVGSISVL QRQVLKLQKE LEATNADLMR 120 YACDGSLAGV LGTGSGSRVS DGSSSASFDQ GSGCFVRFSS SNP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-67	15	130	8	122	LOB family transfactor Ramosa2.1
5ly0_B	4e-67	15	130	8	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027073953.1	1e-73	LOB domain-containing protein 25-like
Refseq	XP_027101865.1	1e-73	LOB domain-containing protein 25-like
Refseq	XP_027154136.1	1e-73	LOB domain-containing protein 25
Swissprot	Q8L8Q3	1e-69	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A371EHY1	3e-73	A0A371EHY1_MUCPR; LOB domain-containing protein 25 (Fragment)
STRING	XP_002521459.1	5e-72	(Ricinus communis)
STRING	XP_009597524.1	8e-72	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	1e-65	LOB domain-containing protein 25

Link Out ? help Back to Top
Phytozome	Kaladp0040s0399.2.p

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]