PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0040s0157.2.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

CAMTA

Protein Properties

Length: 900aa MW: 100333 Da PI: 6.0583

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0040s0157.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	148.7	1.4e-46	12	127	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 +e + rwlk+ e++ i++n e +l ++++++p+sg+++Lyn++++r+fr DG++w+kk+dg+tv E+he+LKv++ve+l+cyYa++een Kaladp0040s0157.2.p 12 REaEVRWLKPAEVYYIIQNCEDRHLRSKSAKKPPSGTFFLYNKRVLRNFRGDGHNWRKKRDGRTVGEAHERLKVDNVEALNCYYARGEEN 101 55589***************999************************************************************* PP CG-1 92 ptfqrrcywlLeeelekivlvhylev 117 ++f+rr++w+L e+++ivlv+yl+v Kaladp0040s0157.2.p 102 SSFRRRSFWMLSGERSHIVLVQYLDV 127 *********************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	63.325	7	133	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.9E-52	10	128	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.1E-40	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.8E-11	348	436	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	4.34E-18	350	434	IPR014756	Immunoglobulin E-set
Pfam	PF01833	3.4E-8	350	433	IPR002909	IPT domain
Gene3D	G3DSA:1.25.40.20	1.7E-15	549	644	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.318	550	642	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.87E-16	554	644	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	3.82E-15	555	642	No hit	No description
Pfam	PF12796	7.7E-8	570	643	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0014	583	618	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	9.938	583	615	IPR002110	Ankyrin repeat
SMART	SM00248	2700	622	651	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	4.25E-8	698	805	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	11	700	722	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.895	701	730	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.12	756	778	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.608	757	786	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.0068	759	777	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0014	779	801	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.974	781	806	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.2E-5	782	801	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence Send to blast
MQSEFDINEL VREAEVRWLK PAEVYYIIQN CEDRHLRSKS AKKPPSGTFF LYNKRVLRNF 60 RGDGHNWRKK RDGRTVGEAH ERLKVDNVEA LNCYYARGEE NSSFRRRSFW MLSGERSHIV 120 LVQYLDVANQ SPGSVSQPSF LLSPPSSLSP GISSATNQEF VSVSGGYDSN INLPSPVSAE 180 IGFEVGISNY MVEVNQASGH LEKQLSLNYE NLNGINSLSS PEGMLNSSNF EGYGMEIADQ 240 VWLDSLLDGS DYAACDGDSG MGRQQTSGRD EDCVSWTDVE NFGEDEQISL ELHEMFPLNT 300 DRFEGPPFSS FTSSQQRNLG YQGKYFETDQ TLIQPQANSN LFIDQNQKFT IRDVSPEWGY 360 SFETTKVIIV GSFLCHPSEH VWTCMFGDIE VPVEIIQEGV ILCEAPPNPS GKLTLCVTSG 420 NRETCSEVRE FEYRNKTGIC AQCSASKKET TMSSEELLLL VRLAQMLLCD YSLGQRGGDS 480 KELGNGLSEK RNSDEDSWSL ILESLLVGSG TFAGTLYWLL EEFLKEKLVR WISSKTQEPT 540 GESTCLLSRK EQGIIHMIAG LGYEWALAPI LSSGVGINFR DINGWTALHW AARFGREKMV 600 ACLIASGALA GALTDPNVQD PTGKTAASIA AINGHKGLAG YLSEVALTSH LSSLKLQESE 660 LSKELAVSEA EHTVNCIAEA NMNTTEDQLS LNDTLTAVRN AASAAARIQA AFRAHSFRKR 720 QQEKASKTIS IDDYGISSDV QVLSAVSKLA FRNTRDHNSA ALSIQKKYRG YKGRKEFLDF 780 RQKVVKIQAH VRGHQTRKNY KVCWAAGILE KIILRWLRKG VGLRGFKPEL ETIDESDEED 840 FAKVFRKKNV EAALEEAVAR VLSMVASPEA RQQYRRMLER YRQAKAHLGN AANERLQHL*

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence Send to blast

MQSEFDINEL VREAEVRWLK PAEVYYIIQN CEDRHLRSKS AKKPPSGTFF LYNKRVLRNF  60
RGDGHNWRKK RDGRTVGEAH ERLKVDNVEA LNCYYARGEE NSSFRRRSFW MLSGERSHIV  120
LVQYLDVANQ SPGSVSQPSF LLSPPSSLSP GISSATNQEF VSVSGGYDSN INLPSPVSAE  180
IGFEVGISNY MVEVNQASGH LEKQLSLNYE NLNGINSLSS PEGMLNSSNF EGYGMEIADQ  240
VWLDSLLDGS DYAACDGDSG MGRQQTSGRD EDCVSWTDVE NFGEDEQISL ELHEMFPLNT  300
DRFEGPPFSS FTSSQQRNLG YQGKYFETDQ TLIQPQANSN LFIDQNQKFT IRDVSPEWGY  360
SFETTKVIIV GSFLCHPSEH VWTCMFGDIE VPVEIIQEGV ILCEAPPNPS GKLTLCVTSG  420
NRETCSEVRE FEYRNKTGIC AQCSASKKET TMSSEELLLL VRLAQMLLCD YSLGQRGGDS  480
KELGNGLSEK RNSDEDSWSL ILESLLVGSG TFAGTLYWLL EEFLKEKLVR WISSKTQEPT  540
GESTCLLSRK EQGIIHMIAG LGYEWALAPI LSSGVGINFR DINGWTALHW AARFGREKMV  600
ACLIASGALA GALTDPNVQD PTGKTAASIA AINGHKGLAG YLSEVALTSH LSSLKLQESE  660
LSKELAVSEA EHTVNCIAEA NMNTTEDQLS LNDTLTAVRN AASAAARIQA AFRAHSFRKR  720
QQEKASKTIS IDDYGISSDV QVLSAVSKLA FRNTRDHNSA ALSIQKKYRG YKGRKEFLDF  780
RQKVVKIQAH VRGHQTRKNY KVCWAAGILE KIILRWLRKG VGLRGFKPEL ETIDESDEED  840
FAKVFRKKNV EAALEEAVAR VLSMVASPEA RQQYRRMLER YRQAKAHLGN AANERLQHL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022725126.1	0.0	calmodulin-binding transcription activator 4-like isoform X3
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	D7TB03	0.0	D7TB03_VITVI; Uncharacterized protein
STRING	VIT_01s0010g03850.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Link Out ? help Back to Top
Phytozome	Kaladp0040s0157.2.p

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]