PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0582.3.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

MYB_related

Protein Properties

Length: 1394aa MW: 153978 Da PI: 5.7493

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0582.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	8.1e-08	849	891	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g WT E +v vk +G++ + +I+ ++g +++ qcks++ k Kaladp0039s0582.3.p 849 GYWTDREKSVFVSSVKSYGKD-FYKISGCIG-TKSKDQCKSFYSK 891 67***************99.*****.********977 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.72E-11	615	676	IPR009057	Homeodomain-like
PROSITE profile	PS51293	12.938	627	678	IPR017884	SANT domain
SMART	SM00717	1.1E-6	628	676	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	6.13E-10	845	897	IPR009057	Homeodomain-like
PROSITE profile	PS51293	10.752	846	897	IPR017884	SANT domain
SMART	SM00717	1.8E-5	847	895	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-5	849	891	IPR001005	SANT/Myb domain
CDD	cd00167	1.25E-4	851	889	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1394 aa Download sequence Send to blast
MKLDGSADVL AEGACNASLS HSLRMPHQES TSISEGRVLE VITDQKLADG IQHHHDPNGY 60 SLRLDCKPIR WPLSGSFSSH ESELSQSSSS KSVPVEFSCS RIRLPLENRK SYQSATEDTI 120 TCVTPTTPSE DMSPWKRPRL RWGEGLAKFE KTKSSGPNDM PTKSDPVSVI SAQISYTASL 180 VTLPSTACNS SPESEEKSTS KAVMADSRSG VTRTMFSECS NHLGSTLFNL ETLDLSVTNH 240 TVPSLIEVIN YDNQCSSDRS FRSCSAMSDL LLLKSTILQA IDMTESQVDL LENELKSFDD 300 ECGCNDLRFL PSDAPTSKFI KEFGKVQEGA SGMSCGHALP SNSSTKLFTL KVPLDSGNSG 360 LKADMDSPGT VTSKLVELST FTEPHVENGT RNDVDRCFDL DASCFPQEIQ KTSKFTSQEG 420 RKSNFCVDAF VGNNNSELVS SDDHWHMSLD ETEQLIDSIR ASNKESADKA SEQFNGVFPV 480 AERIQGDSVE EGCSGDLFIR EILIRKKKAL RFKEHAVILK WKALHSTWKD DKRLLSVRTH 540 RPKAQKQWEM FSQTAQNNNP SVNSNSLHDT NSSLNMGKLP FVSHMKHCRS VLKMPALILD 600 DDERRMCRFL SRNGLVEDPC AVEKERSMIN VWTSEERDIF RDKLASLGKD FRNIASFLDY 660 KTTADCVEFY YKNHKSGSFA NTVEKQERRM LDNSLYCNTY LVTSGKKWDR NMNTASLDIL 720 GAASEIMARN SESKEKKKKN SCNILLHGLG CIRRPPKDSL ISDRPSDFRL AEYEIGTTDS 780 EILPGACGSA SSEAVSSCLT SSVNQEEGHR NGISKTLSII SEPLSIPEDM QTDDYETCSE 840 ESSCELDVGY WTDREKSVFV SSVKSYGKDF YKISGCIGTK SKDQCKSFYS KARKCLGLDV 900 ELPDNDHEQQ SVIDDSNGDG SIAVFTSTLE AVSDTGSYKL NQRVDEDLSL YASVTSNVDS 960 LSPDASMKLR TCHDQLKDKK GSLVLPSAEA KVEGDSVDRS APDPDKLCVC NKSAVSTDTD 1020 AQASANKSVD ISPSLPFVVH QVSSFAQVEK EKCSMEPPLL HNQCGKTDTS RGSFQNIVSY 1080 FTGDAGTGKA PRKYSIDDRT FEFDASAPRH LYMSKGSVGT ETSQDSVLHH TSFGRSNSTP 1140 MYTAALPTPM VPFEKNSVGE MQEHFQRSHY VGNHLLNPEC APSDKFSVSH NFEKEKEKKG 1200 LAWNLNFEDS TVSRDSNSDS ENRLQQYTCI PQGGYIQKCN SLNSNCSIND FPYFKNLVGP 1260 KKQGKQGNIK LFGQVLIPPT APESHFDSDL MEESKFTQFA QLNGAQIDMG PSNQHDMFSG 1320 NENLPVRCFW DGRRMQNAPL LASRPILLSH DASSSSILDC KPLQTSAVPN VNAPPNAGSI 1380 FGNSLNRCTM PRL*

Sequence ? help Back to Top

Protein Sequence Length: 1394 aa Download sequence Send to blast

MKLDGSADVL AEGACNASLS HSLRMPHQES TSISEGRVLE VITDQKLADG IQHHHDPNGY  60
SLRLDCKPIR WPLSGSFSSH ESELSQSSSS KSVPVEFSCS RIRLPLENRK SYQSATEDTI  120
TCVTPTTPSE DMSPWKRPRL RWGEGLAKFE KTKSSGPNDM PTKSDPVSVI SAQISYTASL  180
VTLPSTACNS SPESEEKSTS KAVMADSRSG VTRTMFSECS NHLGSTLFNL ETLDLSVTNH  240
TVPSLIEVIN YDNQCSSDRS FRSCSAMSDL LLLKSTILQA IDMTESQVDL LENELKSFDD  300
ECGCNDLRFL PSDAPTSKFI KEFGKVQEGA SGMSCGHALP SNSSTKLFTL KVPLDSGNSG  360
LKADMDSPGT VTSKLVELST FTEPHVENGT RNDVDRCFDL DASCFPQEIQ KTSKFTSQEG  420
RKSNFCVDAF VGNNNSELVS SDDHWHMSLD ETEQLIDSIR ASNKESADKA SEQFNGVFPV  480
AERIQGDSVE EGCSGDLFIR EILIRKKKAL RFKEHAVILK WKALHSTWKD DKRLLSVRTH  540
RPKAQKQWEM FSQTAQNNNP SVNSNSLHDT NSSLNMGKLP FVSHMKHCRS VLKMPALILD  600
DDERRMCRFL SRNGLVEDPC AVEKERSMIN VWTSEERDIF RDKLASLGKD FRNIASFLDY  660
KTTADCVEFY YKNHKSGSFA NTVEKQERRM LDNSLYCNTY LVTSGKKWDR NMNTASLDIL  720
GAASEIMARN SESKEKKKKN SCNILLHGLG CIRRPPKDSL ISDRPSDFRL AEYEIGTTDS  780
EILPGACGSA SSEAVSSCLT SSVNQEEGHR NGISKTLSII SEPLSIPEDM QTDDYETCSE  840
ESSCELDVGY WTDREKSVFV SSVKSYGKDF YKISGCIGTK SKDQCKSFYS KARKCLGLDV  900
ELPDNDHEQQ SVIDDSNGDG SIAVFTSTLE AVSDTGSYKL NQRVDEDLSL YASVTSNVDS  960
LSPDASMKLR TCHDQLKDKK GSLVLPSAEA KVEGDSVDRS APDPDKLCVC NKSAVSTDTD  1020
AQASANKSVD ISPSLPFVVH QVSSFAQVEK EKCSMEPPLL HNQCGKTDTS RGSFQNIVSY  1080
FTGDAGTGKA PRKYSIDDRT FEFDASAPRH LYMSKGSVGT ETSQDSVLHH TSFGRSNSTP  1140
MYTAALPTPM VPFEKNSVGE MQEHFQRSHY VGNHLLNPEC APSDKFSVSH NFEKEKEKKG  1200
LAWNLNFEDS TVSRDSNSDS ENRLQQYTCI PQGGYIQKCN SLNSNCSIND FPYFKNLVGP  1260
KKQGKQGNIK LFGQVLIPPT APESHFDSDL MEESKFTQFA QLNGAQIDMG PSNQHDMFSG  1320
NENLPVRCFW DGRRMQNAPL LASRPILLSH DASSSSILDC KPLQTSAVPN VNAPPNAGSI  1380
FGNSLNRCTM PRL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	4e-17	589	679	4	93	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	4e-17	589	679	4	93	NUCLEAR RECEPTOR COREPRESSOR 2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	5e-86	MYB family protein

Link Out ? help Back to Top
Phytozome	Kaladp0039s0582.3.p