PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0516.2.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 340aa    MW: 37287.7 Da    PI: 6.285
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0516.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.51.2e-14259283226
                          -S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                          ktelC+ +++tG C+yGd C+FaHg
  Kaladp0039s0516.2.p 259 KTELCNKWQETGSCPYGDHCQFAHG 283
                          8***********************8 PP
2zf-CCCH17.95.5e-06296320125
                          --S---SGGGGTS--TTTTT-SS-S CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaH 25 
                          ykte Cr  +++  C+yG rC+F H
  Kaladp0039s0516.2.p 296 YKTEVCRMVLAGDPCPYGHRCHFRH 320
                          9**********55**********88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.3E-19252290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-11254289IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-8257284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.061257285IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-12259283IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-11291324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-8291326IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.821295323IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-4295322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MENDSHGSYD FVSQDSEVYK SSLYSMFSTN RKQSVSPSDS STTTNSNTSQ SPNDSYSDEK  60
ITAATMNQAL SFIVQNHQDL LNCHNLRLNH LLEATREAEA LRSENASLRV LNRDLIDRLA  120
LMFQSAHPPR SLSPDFQELP LMQGFAGLCI GGDNAGGRDG FVESPSPTSV MENNVMEMPT  180
EPVRVALPKS ISVRSDGYLK TNPSCGKSGA AGGGDSRLRS STRVQAADSV SGKQKVYVQG  240
GKKEGEAVEL EVYNQGMVKT ELCNKWQETG SCPYGDHCQF AHGIEELRPV LRHPRYKTEV  300
CRMVLAGDPC PYGHRCHFRH ALTEQEKLMM SALAELATL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A8e-22259324570Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018842954.11e-97PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F52e-75C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A2I4GGD83e-96A0A2I4GGD8_JUGRE; zinc finger CCCH domain-containing protein 15-like
STRINGVIT_01s0011g04260.t014e-96(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.28e-69C3H family protein