PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Kaladp0039s0452.1.p

Organism

Kalanchoe laxiflora

Taxonomic ID

1670617

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe

Family

Nin-like

Protein Properties

Length: 958aa MW: 105621 Da PI: 5.4845

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Kaladp0039s0452.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.2	8e-29	605	655	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk++gvc+T+LKriCRq+GI+RWP+Rki+++ Kaladp0039s0452.1.p 605 EKSVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGISRWPSRKINKV 655 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.574	589	675	IPR003035	RWP-RK domain
Pfam	PF02042	3.9E-26	608	655	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.7E-19	852	940	No hit	No description
Gene3D	G3DSA:3.10.20.240	6.9E-20	854	936	No hit	No description
PROSITE profile	PS51745	16.851	857	939	IPR000270	PB1 domain
SMART	SM00666	1.9E-15	857	939	IPR000270	PB1 domain
Pfam	PF00564	1.2E-10	858	936	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 958 aa Download sequence Send to blast
MEPSRFKDKG VEYFPSLRLS NENVNDGIQS VVMDDVFSGM CEITNFDSYT GWGSTPVPDQ 60 IYAPYEFVSS LHPTPASYQP FDALNFSEQN IICITPTNGS AGPSSVVVSP FGSEDKLLSN 120 QTGNGQFQCN LASSDENDYG IEPAPIATRS SCHSSNERYL IEKPLGQSLD EKMLRVLSLF 180 KESSGAGILA QVWVPVKHGD HFILTTSDQP YLLDNMLAGY REVSRGYTFS TREAPGSFPG 240 LPGRVFISKV PEWTSNVIYY NTTEYLRVKH AVDHEVRGSI AFPVFNPSEN SCCAVLELVT 300 VKEKPNFDLE MKTVCEALET VSLKTTAPPR LHSQILQSLS KNQRDALAEI ADVLRTVCHA 360 HRLPLALTWI PCSYTEGLRE EFIRLHVEAN TERRGKQILC IEESACFAND KSMEGFVQAC 420 CENYLEGKQG VAGKALQSNQ PFFLPDVKCY DISEYPLVQH ARKFGLSAAV AIRLRSTFTD 480 VDDYILELFL PVTMTGSYEQ QLLLNSLSST MQKVCKTLRT VSDAELAETG NSKLLRDGIC 540 QEFEHTANPG MSSQLSSSTS DTSSFHKLPT DTSKSCIGKR EFEDCWQEDV NAQGRHFEKK 600 RSTVEKSVSL SVLQQYFSGS LKDAAKSIGV CPTTLKRICR QHGISRWPSR KINKVNRSLR 660 KLQTVLDSVQ GVEGGLKFDP TTGGLVPARS LVQDLDKGQI LHHGLACNFA AQEMVSTAPS 720 IELLAIKLEE NDCGMGGSHL RAVQNISFKN TGQGALHKSS FPSESFSDDA KSSGMDVMAN 780 CSLSKQVPRV ESLESHFLSQ NSSSMIDEGN NEHNQPASSS MTDSSNGSLL NGSSSTSQSH 840 EDTYIRKKVS RGNTGSKITV KATFKEDTIR FKFDPFAGCF QLYEEVATRF KLQVGTFKLK 900 YLDDEDELVV LESELDWQEC LEVIESVSSP SVKFTVLEIP CGMGSSGSSN CFLMRGT*

Sequence ? help Back to Top

Protein Sequence Length: 958 aa Download sequence Send to blast

MEPSRFKDKG VEYFPSLRLS NENVNDGIQS VVMDDVFSGM CEITNFDSYT GWGSTPVPDQ  60
IYAPYEFVSS LHPTPASYQP FDALNFSEQN IICITPTNGS AGPSSVVVSP FGSEDKLLSN  120
QTGNGQFQCN LASSDENDYG IEPAPIATRS SCHSSNERYL IEKPLGQSLD EKMLRVLSLF  180
KESSGAGILA QVWVPVKHGD HFILTTSDQP YLLDNMLAGY REVSRGYTFS TREAPGSFPG  240
LPGRVFISKV PEWTSNVIYY NTTEYLRVKH AVDHEVRGSI AFPVFNPSEN SCCAVLELVT  300
VKEKPNFDLE MKTVCEALET VSLKTTAPPR LHSQILQSLS KNQRDALAEI ADVLRTVCHA  360
HRLPLALTWI PCSYTEGLRE EFIRLHVEAN TERRGKQILC IEESACFAND KSMEGFVQAC  420
CENYLEGKQG VAGKALQSNQ PFFLPDVKCY DISEYPLVQH ARKFGLSAAV AIRLRSTFTD  480
VDDYILELFL PVTMTGSYEQ QLLLNSLSST MQKVCKTLRT VSDAELAETG NSKLLRDGIC  540
QEFEHTANPG MSSQLSSSTS DTSSFHKLPT DTSKSCIGKR EFEDCWQEDV NAQGRHFEKK  600
RSTVEKSVSL SVLQQYFSGS LKDAAKSIGV CPTTLKRICR QHGISRWPSR KINKVNRSLR  660
KLQTVLDSVQ GVEGGLKFDP TTGGLVPARS LVQDLDKGQI LHHGLACNFA AQEMVSTAPS  720
IELLAIKLEE NDCGMGGSHL RAVQNISFKN TGQGALHKSS FPSESFSDDA KSSGMDVMAN  780
CSLSKQVPRV ESLESHFLSQ NSSSMIDEGN NEHNQPASSS MTDSSNGSLL NGSSSTSQSH  840
EDTYIRKKVS RGNTGSKITV KATFKEDTIR FKFDPFAGCF QLYEEVATRF KLQVGTFKLK  900
YLDDEDELVV LESELDWQEC LEVIESVSSP SVKFTVLEIP CGMGSSGSSN CFLMRGT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021907023.1	0.0	protein NLP9-like
TrEMBL	A0A061ER47	0.0	A0A061ER47_THECC; Plant regulator RWP-RK family protein, putative isoform 1
STRING	evm.model.supercontig_9.328	0.0	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Kaladp0039s0452.1.p