PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0039s0416.1.p
Organism
Kalanchoe laxiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C3H
Protein Properties Length: 398aa    MW: 43711.6 Da    PI: 8.0105
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0039s0416.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.41.2e-08129149526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+ f+r G C++Gd+C FaHg
  Kaladp0039s0416.1.p 129 VCPEFRR-GGCSRGDSCEFAHG 149
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.8E-6124150IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.79E-5124153IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.497124151IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-6128151IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-7129149IPR000571Zinc finger, CCCH-type
SMARTSM003563.4159182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSSTVCAEQV QKFHSSQQKS HHLHNIDVPP RKLLSRRGAA ARAASFHEDS SSSPKVAEEA  60
LFRKFLPYNS GFDDDDDDPY SSDHFRMFEF KIRRCTRSRS HDWTDCPFAH PGEKARRRDP  120
RRFAYSGTVC PEFRRGGCSR GDSCEFAHGV FECWLHPARY RTEACKDGKS CKRKVCFFAH  180
TPRQLRVLPP SEDSPVSRKP RKTNPSSAAV SGCNHCCVFC LHQQNANNNN NSVINPNSPT  240
STLLSFSPPL SPIKNRSPVE PPFSRFSGCN NGSLSYDEAL AELVASLDAM NVVEGSLAGS  300
GCYPGLGFGG ESEIYSPIMN HHQPQQQSQF VLSPSTPQQQ SFSSSRIFGP AAGRSSLFDP  360
ISPTSLPNYT AGFTTGAAAS SCVDDSPDIA WVNDLLM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016580788.11e-109PREDICTED: zinc finger CCCH domain-containing protein 2-like
TrEMBLA0A2R6QTM91e-112A0A2R6QTM9_ACTCH; Zinc finger CCCH domain-containing protein
STRINGGLYMA12G33320.11e-104(Glycine max)
STRINGXP_009595391.11e-104(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-80C3H family protein