PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Kaladp0039s0413.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
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Family | G2-like | ||||||||
Protein Properties | Length: 418aa MW: 44524.1 Da PI: 6.7692 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.1 | 3.1e-26 | 158 | 211 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqLG ekA+P++ile+m+ +gLt+++++SHLQkYR++ Kaladp0039s0413.1.p 158 KVKVDWTPELHKRFVQAVEQLG--EKAVPSRILEIMGTDGLTRHNIASHLQKYRSH 211 5689*****************4..88****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.29 | 155 | 213 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-25 | 156 | 214 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.27E-15 | 157 | 214 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.4E-25 | 158 | 211 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 3.0E-10 | 161 | 209 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MQMLVASSSS LRDTATKSDD NPETIESGMD EFSDCFSAGS LLDSIDFDEL FAGLDGDPDA 60 LPDLEILGDY SISGGTGDDR GQSSDDGNDA VSGSPFGSGS GLDAGSVCSP GEVVVDKAGD 120 MDVKKDGPEG HFGKVKKSAA SAGKAGRSKA RGSDGNRKVK VDWTPELHKR FVQAVEQLGE 180 KAVPSRILEI MGTDGLTRHN IASHLQKYRS HRKHLIAREA EAASWNQRRH MYGGARGGGM 240 GKRVAVSPWL LPTIGFPPAM SGPMHHHPTV RPLHVWGHPS GDPSQTNTMW PKHILPHQLR 300 PPHLHPRPVW APPHLPYGQS QGMPCYPPPP QRFMAPPVPG IPHHAMYKTD PRAAAAGPAT 360 ILHPPLDSSP SNESIDAALE DVLAKPWLPL PIGLKAPAID TVVGELQRQG VPQIPPS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 2e-14 | 163 | 213 | 6 | 57 | Transcription factor LUX |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007132777.1 | 1e-114 | hypothetical protein PHAVU_011G124200g | ||||
TrEMBL | V7AKX5 | 1e-113 | V7AKX5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007132777.1 | 1e-114 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 2e-59 | GBF's pro-rich region-interacting factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Kaladp0039s0413.1.p |